Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G49240.1 | CDX92473 | AT5G20280.1 | 21798944 |
| AT3G49240.1 | CDY35815 | AT5G20280.1 | 21798944 |
| AT3G49240.1 | CDY45096 | AT5G20280.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017999.1-P | Field mustard | cytosol | 92.95 | 98.23 |
| CDY05914 | Canola | cytosol | 22.48 | 88.74 |
| CDY00193 | Canola | plastid | 76.51 | 78.49 |
| CDX86985 | Canola | mitochondrion | 74.83 | 75.72 |
| CDX83077 | Canola | mitochondrion, plastid | 76.85 | 72.93 |
| CDX68524 | Canola | cytosol, mitochondrion, plastid | 76.17 | 72.29 |
| AT3G49240.1 | Thale cress | cytosol, plastid | 74.5 | 70.59 |
| KRH53501 | Soybean | mitochondrion | 60.4 | 56.96 |
| KRH64444 | Soybean | mitochondrion | 59.73 | 56.42 |
| PGSC0003DMT400023464 | Potato | plastid | 57.05 | 52.15 |
| VIT_16s0098g01840.t01 | Wine grape | plastid | 56.04 | 51.15 |
| CDY05913 | Canola | cytosol | 41.11 | 50.31 |
| HORVU3Hr1G052300.1 | Barley | plastid | 11.07 | 49.25 |
| Solyc03g083280.2.1 | Tomato | nucleus | 41.78 | 49.02 |
| GSMUA_Achr9P05870_001 | Banana | mitochondrion | 45.13 | 41.97 |
| EES03220 | Sorghum | mitochondrion, plastid | 45.81 | 40.99 |
| GSMUA_Achr6P26580_001 | Banana | mitochondrion, plastid | 44.97 | 40.79 |
| HORVU3Hr1G052280.1 | Barley | cytosol, plastid | 44.97 | 40.42 |
| Zm00001d044388_P001 | Maize | plastid | 37.42 | 40.25 |
| Os11t0433600-01 | Rice | nucleus | 32.89 | 40.25 |
| TraesCS3A01G214000.1 | Wheat | cytosol | 44.46 | 39.97 |
| TraesCS3B01G244700.1 | Wheat | cytosol | 44.97 | 39.82 |
| TraesCS3D01G216600.1 | Wheat | cytosol | 44.3 | 39.82 |
| TraesCS1B01G369200.1 | Wheat | mitochondrion | 36.74 | 34.06 |
| EES19865 | Sorghum | mitochondrion | 37.25 | 33.43 |
| TraesCS1D01G357400.1 | Wheat | mitochondrion | 35.57 | 33.33 |
| HORVU1Hr1G080900.3 | Barley | cytosol, plastid | 37.42 | 33.28 |
| Zm00001d038733_P001 | Maize | mitochondrion | 36.07 | 32.28 |
| TraesCS1A01G352600.1 | Wheat | cytosol | 22.82 | 31.85 |
| Os05t0534000-01 | Rice | cytosol | 12.75 | 26.39 |
| CDY21873 | Canola | cytosol | 3.86 | 21.3 |
| CDX93444 | Canola | mitochondrion | 24.16 | 18.92 |
| CDY09648 | Canola | extracellular, mitochondrion, plastid | 11.74 | 18.57 |
| CDX94912 | Canola | mitochondrion | 24.16 | 17.39 |
| CDY34898 | Canola | mitochondrion | 24.83 | 17.33 |
| CDY31037 | Canola | mitochondrion | 23.15 | 17.1 |
| CDY20645 | Canola | mitochondrion | 23.49 | 17.05 |
| CDY53878 | Canola | mitochondrion | 3.86 | 15.97 |
| CDY25066 | Canola | cytosol | 3.36 | 15.5 |
| CDY65945 | Canola | cytosol | 15.27 | 13.4 |
| CDX95410 | Canola | cytosol | 0.84 | 9.62 |
| CDX95653 | Canola | mitochondrion | 6.21 | 9.23 |
| CDY37773 | Canola | mitochondrion | 6.54 | 9.18 |
| CDY25062 | Canola | mitochondrion | 5.37 | 8.82 |
| CDY33104 | Canola | mitochondrion | 5.37 | 8.7 |
| CDX80067 | Canola | mitochondrion | 6.04 | 8.28 |
| CDY10671 | Canola | mitochondrion | 5.37 | 8.02 |
| CDX80068 | Canola | mitochondrion | 6.38 | 7.18 |
| CDY37774 | Canola | mitochondrion | 6.04 | 6.55 |
| CDY53879 | Canola | cytosol | 1.01 | 3.33 |
| CDX71714 | Canola | cytosol | 1.34 | 3.29 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | UniProt:A0A078F8P1 | EnsemblPlants:CDY08118 | ProteinID:CDY08118 | ProteinID:CDY08118.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00125398001 | InterPro:IPR002885 |
| InterPro:IPR011990 | PFAM:PF01535 | PFAM:PF13041 | PFAM:PF13812 | PFscan:PS51375 | PANTHER:PTHR24015 |
| PANTHER:PTHR24015:SF237 | InterPro:Pentatricopeptide_repeat | SUPFAM:SSF81901 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0004EE3CA2 |
| SEG:seg | : | : | : | : | : |
Description
BnaA06g16080DBnaA06g16080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8P1]
Coordinates
chrLK031983:+:465559..467349
Molecular Weight (calculated)
68094.0 Da
IEP (calculated)
5.543
GRAVY (calculated)
-0.451
Length
596 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFAKAFFFN HLQTLSRSSR PRLPPSFSPV RHMSFATQEE AAAERRRRKR RLSLEPNLNP LNRSPQQQQP QITRPILNPN IPKLPESLSA LTGKRLHLHN
101: HILKLIHEND LEEAALYTRH SVYSNCRPTI FTVNAVLTAQ LRQSKYEAFL QLHGFINQAG IAANIITYNL LFQAYLDVKK PELALEHYKL FVDNAPLNPS
201: VATFRILVKG LVDNEKLEKA MEIKEEMGVR GFIADPVVYS YLMIGCGKGS DGGGVLNLYE ELKEKLGGFV EDGVVYGPLM KGYFLKEMEE EAMECYEEVL
301: GEESKVKMSA VGYNYVLEAL RENGKFDEAL KLFEVMKKEH KPPRRLALNV GSFNVVANGY CGEGKFEEAM EVFRGMGEFR CSPDTLSFNN VMNQLCGNGL
401: LAEAEKLYIE MDEKNKVKPD EYTYGLLMDT CFKEGKIDEG AAYYKTMAES SLRPNLAVYN RLQDQLVKSG KLDDARSFFV MMVSRLKMDD DAYKFVMRAF
501: SEAGRLDEML KIVDVMLDED TVRVSEEIQE FVKEELRKEG REDDLQKLMD EKERLKAEAK ARELEAEEAK KRSIFNNIAS ILPLKREEEK SEDDLG
101: HILKLIHEND LEEAALYTRH SVYSNCRPTI FTVNAVLTAQ LRQSKYEAFL QLHGFINQAG IAANIITYNL LFQAYLDVKK PELALEHYKL FVDNAPLNPS
201: VATFRILVKG LVDNEKLEKA MEIKEEMGVR GFIADPVVYS YLMIGCGKGS DGGGVLNLYE ELKEKLGGFV EDGVVYGPLM KGYFLKEMEE EAMECYEEVL
301: GEESKVKMSA VGYNYVLEAL RENGKFDEAL KLFEVMKKEH KPPRRLALNV GSFNVVANGY CGEGKFEEAM EVFRGMGEFR CSPDTLSFNN VMNQLCGNGL
401: LAEAEKLYIE MDEKNKVKPD EYTYGLLMDT CFKEGKIDEG AAYYKTMAES SLRPNLAVYN RLQDQLVKSG KLDDARSFFV MMVSRLKMDD DAYKFVMRAF
501: SEAGRLDEML KIVDVMLDED TVRVSEEIQE FVKEELRKEG REDDLQKLMD EKERLKAEAK ARELEAEEAK KRSIFNNIAS ILPLKREEEK SEDDLG
001: MSISKAAFLN HLQTLSRSYR HRVLPQPFLA VRYMSFATQE EAAAERRRRK RRLRMEPPVN SFNRSQQQQS QIPRPIQNPN IPKLPESVSA LVGKRLDLHN
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC
Arabidopsis Description
EMB1796Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M3A8]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.