Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019587.1-P | Field mustard | cytosol | 74.4 | 83.27 |
| CDX86985 | Canola | mitochondrion | 75.04 | 80.14 |
| CDY00193 | Canola | plastid | 73.45 | 79.52 |
| Bra017999.1-P | Field mustard | cytosol | 69.79 | 77.84 |
| CDY08118 | Canola | plastid | 70.59 | 74.5 |
| CDY05914 | Canola | cytosol | 16.06 | 66.89 |
| KRH64444 | Soybean | mitochondrion | 58.19 | 58.0 |
| KRH53501 | Soybean | mitochondrion | 58.03 | 57.75 |
| HORVU3Hr1G052300.1 | Barley | plastid | 11.76 | 55.22 |
| VIT_16s0098g01840.t01 | Wine grape | plastid | 56.44 | 54.36 |
| PGSC0003DMT400023464 | Potato | plastid | 54.69 | 52.76 |
| Solyc03g083280.2.1 | Tomato | nucleus | 40.22 | 49.8 |
| GSMUA_Achr9P05870_001 | Banana | mitochondrion | 45.63 | 44.77 |
| CDY05913 | Canola | cytosol | 33.86 | 43.74 |
| EES03220 | Sorghum | mitochondrion, plastid | 45.95 | 43.39 |
| GSMUA_Achr6P26580_001 | Banana | mitochondrion, plastid | 44.99 | 43.07 |
| Zm00001d044388_P001 | Maize | plastid | 37.84 | 42.96 |
| TraesCS3D01G216600.1 | Wheat | cytosol | 44.52 | 42.23 |
| TraesCS3A01G214000.1 | Wheat | cytosol | 44.36 | 42.08 |
| HORVU3Hr1G052280.1 | Barley | cytosol, plastid | 44.04 | 41.78 |
| TraesCS3B01G244700.1 | Wheat | cytosol | 44.52 | 41.6 |
| Os11t0433600-01 | Rice | nucleus | 31.48 | 40.66 |
| TraesCS1B01G369200.1 | Wheat | mitochondrion | 35.45 | 34.68 |
| EES19865 | Sorghum | mitochondrion | 36.09 | 34.19 |
| TraesCS1D01G357400.1 | Wheat | mitochondrion | 34.34 | 33.96 |
| HORVU1Hr1G080900.3 | Barley | cytosol, plastid | 35.77 | 33.58 |
| Zm00001d038733_P001 | Maize | mitochondrion | 35.14 | 33.18 |
| TraesCS1A01G352600.1 | Wheat | cytosol | 22.1 | 32.55 |
| Os05t0534000-01 | Rice | cytosol | 13.2 | 28.82 |
| AT1G10270.1 | Thale cress | mitochondrion | 25.76 | 17.74 |
| AT3G60960.1 | Thale cress | mitochondrion | 6.68 | 10.42 |
| AT3G60980.1 | Thale cress | mitochondrion | 5.56 | 8.5 |
| AT5G28340.1 | Thale cress | cytosol | 5.72 | 8.28 |
| AT5G28380.1 | Thale cress | cytosol | 4.61 | 7.44 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EntrezGene:824085 | ProteinID:AEE78514.1 | ArrayExpress:AT3G49240 | EnsemblPlantsGene:AT3G49240 |
| RefSeq:AT3G49240 | TAIR:AT3G49240 | RefSeq:AT3G49240-TAIR-G | EnsemblPlants:AT3G49240.1 | TAIR:AT3G49240.1 | EMBL:AY099591 |
| EMBL:AY864352 | Unigene:At.43791 | EMBL:BT008786 | ProteinID:CAB66403.1 | ncoils:Coil | GO:GO:0000003 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 |
| GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006139 | GO:GO:0006349 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009451 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009790 |
| GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009960 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0040029 |
| GO:GO:0090305 | InterPro:IPR002885 | InterPro:IPR011990 | RefSeq:NP_190493.1 | PFAM:PF01535 | PFAM:PF12854 |
| PFAM:PF13041 | PFAM:PF13812 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007057 | PO:PO:0007064 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF237 | InterPro:Pentatricopeptide_repeat | UniProt:Q9M3A8 | SUPFAM:SSF48452 |
| TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI00000AAA97 | Symbol:emb1796 | SEG:seg | : |
Description
EMB1796Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M3A8]
Coordinates
chr3:+:18255961..18258203
Molecular Weight (calculated)
71296.9 Da
IEP (calculated)
5.205
GRAVY (calculated)
-0.432
Length
629 amino acids
Sequence
(BLAST)
(BLAST)
001: MSISKAAFLN HLQTLSRSYR HRVLPQPFLA VRYMSFATQE EAAAERRRRK RRLRMEPPVN SFNRSQQQQS QIPRPIQNPN IPKLPESVSA LVGKRLDLHN
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.