CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 6
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03629
KRH20178

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49240.1	KRH03629	AT5G20280.1	21798944
AT3G49240.1	KRH20178	AT5G20280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53501	Soybean	mitochondrion	84.15	84.02
VIT_16s0098g01840.t01	Wine grape	plastid	65.29	63.09
Bra017999.1-P	Field mustard	cytosol	55.63	62.23
Bra019587.1-P	Field mustard	cytosol	55.31	62.1
CDY00193	Canola	plastid	56.74	61.62
CDY08118	Canola	plastid	56.42	59.73
CDX86985	Canola	mitochondrion	55.47	59.42
PGSC0003DMT400023464	Potato	plastid	61.01	59.05
AT3G49240.1	Thale cress	cytosol, plastid	58.0	58.19
Solyc03g083280.2.1	Tomato	nucleus	46.59	57.87
HORVU3Hr1G052300.1	Barley	plastid	12.2	57.46
CDX68524	Canola	cytosol, mitochondrion, plastid	57.05	57.32
CDX83077	Canola	mitochondrion, plastid	56.42	56.69
Bra029944.1-P	Field mustard	mitochondrion, plastid	57.53	56.19
CDY05914	Canola	cytosol	13.0	54.3
GSMUA_Achr9P05870_001	Banana	mitochondrion	49.45	48.67
GSMUA_Achr6P26580_001	Banana	mitochondrion, plastid	49.92	47.95
EES03220	Sorghum	mitochondrion, plastid	48.97	46.4
Zm00001d044388_P001	Maize	plastid	40.41	46.03
TraesCS3D01G216600.1	Wheat	cytosol	48.18	45.85
TraesCS3A01G214000.1	Wheat	cytosol	48.18	45.85
HORVU3Hr1G052280.1	Barley	cytosol, plastid	48.02	45.7
TraesCS3B01G244700.1	Wheat	cytosol	47.86	44.87
Os11t0433600-01	Rice	nucleus	34.23	44.35
TraesCS1B01G369200.1	Wheat	mitochondrion	36.93	36.24
CDY05913	Canola	cytosol	27.73	35.93
EES19865	Sorghum	mitochondrion	37.72	35.84
TraesCS1D01G357400.1	Wheat	mitochondrion	35.97	35.69
HORVU1Hr1G080900.3	Barley	cytosol, plastid	37.56	35.37
Zm00001d038733_P001	Maize	mitochondrion	36.77	34.83
TraesCS1A01G352600.1	Wheat	cytosol	22.66	33.49
Os05t0534000-01	Rice	cytosol	13.31	29.17
KRH26275	Soybean	mitochondrion	26.78	21.34
KRH06034	Soybean	mitochondrion	26.78	19.54

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100811113	MapMan:35.1	EMBL:ACUP02002765	ncoils:Coil	EnsemblPlantsGene:GLYMA_04G235800
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0090305	UniProt:I1JYR8	InterPro:IPR002885	InterPro:IPR011990	ProteinID:KRH64443.1
EnsemblPlants:KRH64444	ProteinID:KRH64444	ProteinID:KRH64444.1	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF237	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002339F20	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:50380641..50383543

Molecular Weight (calculated)

71514.6 Da

IEP (calculated)

5.542

GRAVY (calculated)

-0.464

Length

631 amino acids

Sequence
(BLAST)

001: MALSKATFLT HLRTLSNSHR RPSSCVSIRL LSFSSPEEAA AERRRRKRQL RMEPPLSALN RTQTAPKPLQ SPYYLNPNNP KLPEHVSALT GNRLNLHNRI
101: LTLIRENDLD EAALYTRHSI YSNCRPTIFT INAVLAALLR QSRYSDLLSL HRFITQAGVV PNIITHNLVF QTYLDCRKPD TALEHYKQFL NDAPMNPSPT
201: TYRVLIKGLI DNSKLERAMD IKTEMDSKGF APDPLVYHYL MLGHARVSDG DAILRLYEEL RERLGGVVQD GIVFGCLMKG YFVKGMEKEA MECYEEALGK
301: KKMSAVGYNS VLDALSKNGR FDEALRLFDR MMKEHEPLKR LSVNLGSFNV IVDGYCDEGR FEEAMEVFRK MGEYRCSPDT LSFNNLIDRL CDNGRIVEAE
401: EVYGEMEGKG VSPDEFTYGL LMDACFRENR ADDAAAYFRK MVDSGLRPNL AVYNRLVGGL VKVGKIDEAK GFFELMVKKL KMDVTSYQFI MKVLSDEGRL
501: DEMLKIVDTL LDDNGVDFDE EFQEFVKGEL RKEGREEELT KLMEEKERLK AEAKAKEIEA AEAAKRSARA AVASLLPSKL FGNKETDLES KREGEIQALN
601: EENTNATASE AELVEETTET EGDRASEQLT G

Best Arabidopsis Sequence Match ( AT3G49240.1 )
(BLAST)

001: MSISKAAFLN HLQTLSRSYR HRVLPQPFLA VRYMSFATQE EAAAERRRRK RRLRMEPPVN SFNRSQQQQS QIPRPIQNPN IPKLPESVSA LVGKRLDLHN
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC

Arabidopsis Description

EMB1796Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M3A8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.