Factsheet for Os11t0433600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
YLoc:	cytosol

nucleus: 23303719

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0184400-01
Os06t0643800-01
Os08t0301500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49240.1	Os02t0184400-01	AT5G20280.1	21798944
AT3G49240.1	Os06t0643800-01	AT5G20280.1	21798944
AT3G49240.1	Os08t0301500-01	AT5G20280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03220	Sorghum	mitochondrion, plastid	83.78	61.26
TraesCS3D01G216600.1	Wheat	cytosol	81.93	60.18
HORVU3Hr1G052280.1	Barley	cytosol, plastid	81.31	59.73
TraesCS3A01G214000.1	Wheat	cytosol	81.11	59.58
TraesCS3B01G244700.1	Wheat	cytosol	80.08	57.95
Zm00001d044388_P001	Maize	plastid	63.04	55.42
Os05t0534000-01	Rice	cytosol	30.8	52.08
GSMUA_Achr6P26580_001	Banana	mitochondrion, plastid	62.63	46.42
GSMUA_Achr9P05870_001	Banana	mitochondrion	60.57	46.02
Bra019587.1-P	Field mustard	cytosol	41.68	36.12
VIT_16s0098g01840.t01	Wine grape	plastid	46.82	34.92
Bra017999.1-P	Field mustard	cytosol	40.25	34.75
KRH53501	Soybean	mitochondrion	44.97	34.65
CDY00193	Canola	plastid	41.07	34.42
KRH64444	Soybean	mitochondrion	44.35	34.23
CDY05914	Canola	cytosol	10.47	33.77
PGSC0003DMT400023464	Potato	plastid	45.17	33.74
CDX86985	Canola	mitochondrion	40.45	33.45
CDX83077	Canola	mitochondrion, plastid	42.71	33.12
CDY08118	Canola	plastid	40.25	32.89
CDX68524	Canola	cytosol, mitochondrion, plastid	42.09	32.64
Bra029944.1-P	Field mustard	mitochondrion, plastid	42.71	32.2
AT3G49240.1	Thale cress	cytosol, plastid	40.66	31.48
Solyc03g083280.2.1	Tomato	nucleus	27.72	26.57
CDY05913	Canola	cytosol	19.92	19.92
Os05t0365500-01	Rice	nucleus	23.41	12.51
HORVU3Hr1G052300.1	Barley	plastid	0.62	2.24

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ProteinID:BAF28162.2	ProteinID:BAT13831.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	EnsemblPlantsGene:Os11g0433600	EnsemblPlants:Os11t0433600-01	PFAM:PF01535	PFAM:PF12854
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF237	InterPro:Pentatricopeptide_repeat	UniProt:Q0IT03
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001B65EED	SEG:seg	:

Description

Tetratricopeptide-like helical domain containing protein. (Os11t0433600-01)

Coordinates

chr11:+:14028186..14029896

Molecular Weight (calculated)

54112.1 Da

IEP (calculated)

4.383

GRAVY (calculated)

-0.438

Length

487 amino acids

Sequence
(BLAST)

001: YNLLLQAYCD CRRPDTALEH FRLLLKDDSP VLPSPTTYRI LARSLAENGK LEQAIELKDG MLERGLVAPD PQVYALVMGG FVNAGDGDTV VSLYEELVEK
101: LGGGQILDGM VYGNLMKGYF LKGMEKEAMD CYAEVLGEGS KVRFGAVSYN MVLDALGRNG KLDDALQLFD RMCEEHDPPR RIAVNLGSFN VMVDAYCRAE
201: RFQDAIEVFG KMGEKRCAPD ALSYNNLIDW LGKNELVGEA EQLYKEMGER GVNPDEYTYV LLIESYFKVD RVDDSVSYFN KMFVAGLRPN ANAFNKVIGG
301: LVKVDRLDEA QGFFDKMPEK EVKPNIGSYE LLLRAYIDAA RLDDAIKMAK CILLDESVVF SDELKALLEG ALQKDGRDGD MTKLYEDVER EKAEAAARAA
401: EEKARAEALA KEEEERKKAE AKAKEEAAAR ASRAAIEAVL GRKKEGENDD STVNVEEAQV VESHSDTNDI TEENEGDDQK KSGDALP

Best Arabidopsis Sequence Match ( AT3G49240.1 )
(BLAST)

001: MSISKAAFLN HLQTLSRSYR HRVLPQPFLA VRYMSFATQE EAAAERRRRK RRLRMEPPVN SFNRSQQQQS QIPRPIQNPN IPKLPESVSA LVGKRLDLHN
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC

Arabidopsis Description

EMB1796Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M3A8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.