Factsheet for HORVU3Hr1G052300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G002280.1
HORVU6Hr1G028330.1
HORVU7Hr1G115590.10

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49240.1	HORVU3Hr1G002280.1	AT5G20280.1	21798944
AT3G49240.1	HORVU6Hr1G028330.1	AT5G20280.1	21798944
AT3G49240.1	HORVU7Hr1G115590.10	AT5G20280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044388_P001	Maize	plastid	77.61	18.77
TraesCS3A01G214000.1	Wheat	cytosol	79.85	16.14
TraesCS3D01G216600.1	Wheat	cytosol	79.85	16.14
HORVU3Hr1G052280.1	Barley	cytosol, plastid	79.1	15.99
TraesCS3B01G244700.1	Wheat	cytosol	79.1	15.75
Solyc03g083280.2.1	Tomato	nucleus	58.96	15.55
EES03220	Sorghum	mitochondrion, plastid	76.87	15.47
GSMUA_Achr9P05870_001	Banana	mitochondrion	64.93	13.57
VIT_16s0098g01840.t01	Wine grape	plastid	65.67	13.48
GSMUA_Achr6P26580_001	Banana	mitochondrion, plastid	64.18	13.09
Bra019587.1-P	Field mustard	cytosol	52.99	12.63
KRH64444	Soybean	mitochondrion	57.46	12.2
KRH53501	Soybean	mitochondrion	57.46	12.18
PGSC0003DMT400023464	Potato	plastid	58.96	12.12
CDX68524	Canola	cytosol, mitochondrion, plastid	56.72	12.1
CDY00193	Canola	plastid	52.24	12.05
Bra029944.1-P	Field mustard	mitochondrion, plastid	56.72	11.76
AT3G49240.1	Thale cress	cytosol, plastid	55.22	11.76
CDX86985	Canola	mitochondrion	50.75	11.54
Bra017999.1-P	Field mustard	cytosol	48.51	11.52
CDX83077	Canola	mitochondrion, plastid	53.73	11.46
CDY08118	Canola	plastid	49.25	11.07
HORVU1Hr1G080900.3	Barley	cytosol, plastid	46.27	9.25
CDY05913	Canola	cytosol	30.6	8.42
HORVU2Hr1G011400.1	Barley	cytosol	4.48	0.75
Os11t0433600-01	Rice	nucleus	2.24	0.62
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	3.73	0.57
CDY05914	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:HORVU3Hr1G052300.1	EnsemblPlantsGene:HORVU3Hr1G052300	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF237	SEG:seg	UniParc:UPI000B45FD47
UniProt:A0A287L1T9	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:-:378700875..378701510

Molecular Weight (calculated)

14324.3 Da

IEP (calculated)

11.259

GRAVY (calculated)

-0.066

Length

134 amino acids

Sequence
(BLAST)

001: MPPPTPPLSA AAASAASAWS HRPPAARLPS APLGGPRPSS NPNALKLPEP ASVLSGKRLD LHRRILTLVR ENDLDEAALL TRHSIYSNCR PTVFTCNTVL
101: AALLRQARYA DLLSLHRFVT QASVAPTVAT HNLL

Best Arabidopsis Sequence Match ( AT3G49240.1 )
(BLAST)

001: MSISKAAFLN HLQTLSRSYR HRVLPQPFLA VRYMSFATQE EAAAERRRRK RRLRMEPPVN SFNRSQQQQS QIPRPIQNPN IPKLPESVSA LVGKRLDLHN
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC

Arabidopsis Description

EMB1796Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M3A8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.