Factsheet for Bra029944.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83077	Canola	mitochondrion, plastid	89.94	92.52
Bra019587.1-P	Field mustard	cytosol	71.98	82.74
Bra017999.1-P	Field mustard	cytosol	70.43	80.67
KRH64444	Soybean	mitochondrion	56.19	57.53
HORVU3Hr1G052300.1	Barley	plastid	11.76	56.72
KRH53501	Soybean	mitochondrion	55.42	56.65
PGSC0003DMT400023464	Potato	plastid	55.88	55.37
VIT_16s0098g01840.t01	Wine grape	plastid	55.42	54.82
Solyc03g083280.2.1	Tomato	nucleus	41.18	52.36
EES03220	Sorghum	mitochondrion, plastid	45.51	44.14
Zm00001d044388_P001	Maize	plastid	37.62	43.86
GSMUA_Achr9P05870_001	Banana	mitochondrion	43.19	43.53
Os11t0433600-01	Rice	nucleus	32.2	42.71
HORVU3Hr1G052280.1	Barley	cytosol, plastid	43.65	42.53
TraesCS3D01G216600.1	Wheat	cytosol	43.65	42.53
GSMUA_Achr6P26580_001	Banana	mitochondrion, plastid	43.19	42.47
TraesCS3A01G214000.1	Wheat	cytosol	43.19	42.08
TraesCS3B01G244700.1	Wheat	cytosol	43.19	41.46
TraesCS1B01G369200.1	Wheat	mitochondrion	34.98	35.15
TraesCS1D01G357400.1	Wheat	mitochondrion	33.75	34.28
EES19865	Sorghum	mitochondrion	34.98	34.04
HORVU1Hr1G080900.3	Barley	cytosol, plastid	34.83	33.58
Zm00001d038733_P001	Maize	mitochondrion	33.9	32.88
TraesCS1A01G352600.1	Wheat	cytosol	21.52	32.55
Os05t0534000-01	Rice	cytosol	12.69	28.47
Bra018451.1-P	Field mustard	mitochondrion	23.68	18.96
Bra019952.1-P	Field mustard	mitochondrion	23.99	18.93
Bra031706.1-P	Field mustard	mitochondrion	24.77	18.74
Bra004488.1-P	Field mustard	cytosol	5.26	8.27
Bra004487.1-P	Field mustard	mitochondrion	6.35	7.75
Bra000388.1-P	Field mustard	cytosol	3.1	6.45

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra029944	EnsemblPlants:Bra029944.1	EnsemblPlants:Bra029944.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	UniProt:M4EMC4
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF237	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002544156
SEG:seg	:	:	:	:	:

Description

AT3G49240 (E=4e-247) emb1796 | emb1796 (embryo defective 1796); ATP binding

Coordinates

chrA01:+:15102473..15104413

Molecular Weight (calculated)

72835.3 Da

IEP (calculated)

4.995

GRAVY (calculated)

-0.436

Length

646 amino acids

Sequence
(BLAST)

001: MSIAKAAFFN HLQTLARAYR PRLPPPFSAV RYMSFATQEE AAAERRKRKR RLRMEPPLNS FNRSHQQQQQ PQISRPIQNP NIPKLPESVS SLTGKRLDLH
101: NHILKLIREN DLEEAALYTR HSVYSNCRPT IFTVNAVLAA QLRQGKYAAL LQLHRFINQA GIAANIITYN LIFQAYLDVR KPEIALEHYK LFIDNAPLNP
201: SIATFRILVK GLVDNDSLEK AMEVKEDMCV RGFVPDPVVY SCLMIGCVKS SDAHGVLQLF DELKEKLGGF VEDGVVYGQL MKGYLMKEME KEAMECYEEA
301: VGENSKVRMS AMAYNYVLEA LSENGKFDEA LKLFDAMKKE HSPPKRLALN LGSFNVMVNG YCAEGKFGEA VEVFRQMGEF RCSPDTLSFN NLMNQLCENG
401: LLAEAENLYG EMDEKKVKPD EYTYGLLMDT CFKEGKIDEG AAYYKTMVES SLRPNLAVYN RLQDQLVKAG KLDDAKSFFD MMVSKLSMDD EAYKFIMRAL
501: SEAGRLDDVL KIVDGMLDDE TVRVSEEIKE FVKEELRKEG REDDLQKLMD EKERLKAEAE AKELEAAEAK NRSTNIRIAS LIPKQEQEKS DNVKMLWDNN
601: GVAEEIDVAD VVAQGKEAGE VSQGEEAGVV AQGEESGGSN GQAPPC

Best Arabidopsis Sequence Match ( AT3G49240.1 )
(BLAST)

001: MSISKAAFLN HLQTLSRSYR HRVLPQPFLA VRYMSFATQE EAAAERRRRK RRLRMEPPVN SFNRSQQQQS QIPRPIQNPN IPKLPESVSA LVGKRLDLHN
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC

Arabidopsis Description

EMB1796Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M3A8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.