Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os05t0534000-01 | Rice | cytosol | 44.5 | 65.97 |
| TraesCS1D01G357400.1 | Wheat | mitochondrion | 88.52 | 59.43 |
| TraesCS1B01G369200.1 | Wheat | mitochondrion | 87.59 | 58.16 |
| HORVU1Hr1G080900.3 | Barley | cytosol, plastid | 85.48 | 54.48 |
| EES19865 | Sorghum | mitochondrion | 67.68 | 43.52 |
| Zm00001d038733_P001 | Maize | mitochondrion | 65.81 | 42.19 |
| CDY05914 | Canola | cytosol | 11.94 | 33.77 |
| TraesCS3A01G214000.1 | Wheat | cytosol | 48.48 | 31.22 |
| GSMUA_Achr9P05870_001 | Banana | mitochondrion | 44.96 | 29.95 |
| GSMUA_Achr6P26580_001 | Banana | mitochondrion, plastid | 45.2 | 29.38 |
| Bra019587.1-P | Field mustard | cytosol | 32.55 | 24.73 |
| KRH53501 | Soybean | mitochondrion | 35.83 | 24.21 |
| Bra017999.1-P | Field mustard | cytosol | 31.62 | 23.94 |
| CDX86985 | Canola | mitochondrion | 32.32 | 23.43 |
| CDY00193 | Canola | plastid | 31.62 | 23.24 |
| CDX83077 | Canola | mitochondrion, plastid | 33.72 | 22.93 |
| CDY08118 | Canola | plastid | 31.85 | 22.82 |
| KRH64444 | Soybean | mitochondrion | 33.49 | 22.66 |
| PGSC0003DMT400023464 | Potato | plastid | 34.43 | 22.55 |
| VIT_16s0098g01840.t01 | Wine grape | plastid | 34.19 | 22.36 |
| AT3G49240.1 | Thale cress | cytosol, plastid | 32.55 | 22.1 |
| Bra029944.1-P | Field mustard | mitochondrion, plastid | 32.55 | 21.52 |
| CDX68524 | Canola | cytosol, mitochondrion, plastid | 31.38 | 21.34 |
| Solyc03g083280.2.1 | Tomato | nucleus | 20.37 | 17.13 |
| TraesCS2A01G524300.1 | Wheat | mitochondrion | 21.78 | 11.25 |
| TraesCS2A01G063500.1 | Wheat | mitochondrion | 22.01 | 10.01 |
| CDY05913 | Canola | cytosol | 11.01 | 9.65 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | PFAM:PF01535 | PFAM:PF13041 | PFAM:PF13812 | PFscan:PS51375 |
| PANTHER:PTHR24015 | PANTHER:PTHR24015:SF1616 | InterPro:Pentatricopeptide_repeat | SUPFAM:SSF48452 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf |
| EnsemblPlantsGene:TraesCS1A01G352600 | EnsemblPlants:TraesCS1A01G352600.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr1A:+:536659351..536660634
Molecular Weight (calculated)
47104.9 Da
IEP (calculated)
4.568
GRAVY (calculated)
-0.366
Length
427 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTASSWLGL WRPGMGPKQW SCTKNLQDKL GGEPVLDGIV YGSLMKAYFL MGMEEKAMGC CKELLAPESE VRFGTESYTQ VLDALGKNER LEDALNLFDR
101: MLGEHDPPLR ITVDVRSFSV MVDAYCAAGR FEDAIAVFRR MAEYKVAPDV AAYNNLIRHL GLNRLADEAE VLHKEMGEHG LVADEETCVL LMEARFKADR
201: IDDGISYFNR MAELELKPDA SHYHRIVDGL VGLSLLDKAH EYFDQMREKE IHPSTATYET LLKAYVGVGA TRLDDAAKVA KCILLDENVV FSDEMRELLE
301: GALRGEGRED DIAKLYEDVE REKAEAVLRV EEEKARAEAL AREERAARRA EAAAKDEAAA KASAAAIEAI IGHRRKTEGE TAEPASTPNA LDGGLLSRLG
401: LSSPGEGAPQ DTPIISTETK GDGQEQF
101: MLGEHDPPLR ITVDVRSFSV MVDAYCAAGR FEDAIAVFRR MAEYKVAPDV AAYNNLIRHL GLNRLADEAE VLHKEMGEHG LVADEETCVL LMEARFKADR
201: IDDGISYFNR MAELELKPDA SHYHRIVDGL VGLSLLDKAH EYFDQMREKE IHPSTATYET LLKAYVGVGA TRLDDAAKVA KCILLDENVV FSDEMRELLE
301: GALRGEGRED DIAKLYEDVE REKAEAVLRV EEEKARAEAL AREERAARRA EAAAKDEAAA KASAAAIEAI IGHRRKTEGE TAEPASTPNA LDGGLLSRLG
401: LSSPGEGAPQ DTPIISTETK GDGQEQF
001: MSISKAAFLN HLQTLSRSYR HRVLPQPFLA VRYMSFATQE EAAAERRRRK RRLRMEPPVN SFNRSQQQQS QIPRPIQNPN IPKLPESVSA LVGKRLDLHN
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC
Arabidopsis Description
EMB1796Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M3A8]
SUBAcon: [cytosol,plastid]
SUBAcon: [cytosol,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.