Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Bra002289.1-P | |
Bra020096.1-P |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G49240.1 | Bra002289.1-P | AT5G20280.1 | 21798944 |
AT3G49240.1 | Bra020096.1-P | AT5G20280.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY08118 | Canola | plastid | 98.23 | 92.95 |
Bra019587.1-P | Field mustard | cytosol | 78.19 | 78.47 |
Bra029944.1-P | Field mustard | mitochondrion, plastid | 80.67 | 70.43 |
AT3G49240.1 | Thale cress | cytosol, plastid | 77.84 | 69.79 |
KRH64444 | Soybean | mitochondrion | 62.23 | 55.63 |
KRH53501 | Soybean | mitochondrion | 61.88 | 55.22 |
PGSC0003DMT400023464 | Potato | plastid | 59.57 | 51.53 |
VIT_16s0098g01840.t01 | Wine grape | plastid | 58.51 | 50.54 |
HORVU3Hr1G052300.1 | Barley | plastid | 11.52 | 48.51 |
Solyc03g083280.2.1 | Tomato | nucleus | 42.91 | 47.64 |
GSMUA_Achr9P05870_001 | Banana | mitochondrion | 47.16 | 41.5 |
Os11t0433600-01 | Rice | nucleus | 34.75 | 40.25 |
GSMUA_Achr6P26580_001 | Banana | mitochondrion, plastid | 46.81 | 40.18 |
EES03220 | Sorghum | mitochondrion, plastid | 47.34 | 40.09 |
HORVU3Hr1G052280.1 | Barley | cytosol, plastid | 46.63 | 39.67 |
Zm00001d044388_P001 | Maize | plastid | 38.83 | 39.53 |
TraesCS3B01G244700.1 | Wheat | cytosol | 46.63 | 39.08 |
TraesCS3A01G214000.1 | Wheat | cytosol | 45.92 | 39.06 |
TraesCS3D01G216600.1 | Wheat | cytosol | 45.74 | 38.91 |
TraesCS1B01G369200.1 | Wheat | mitochondrion | 38.3 | 33.59 |
TraesCS1D01G357400.1 | Wheat | mitochondrion | 37.06 | 32.86 |
EES19865 | Sorghum | mitochondrion | 38.65 | 32.83 |
HORVU1Hr1G080900.3 | Barley | cytosol, plastid | 38.48 | 32.39 |
TraesCS1A01G352600.1 | Wheat | cytosol | 23.94 | 31.62 |
Zm00001d038733_P001 | Maize | mitochondrion | 37.23 | 31.53 |
Os05t0534000-01 | Rice | cytosol | 13.3 | 26.04 |
Bra019952.1-P | Field mustard | mitochondrion | 24.82 | 17.09 |
Bra031706.1-P | Field mustard | mitochondrion | 25.35 | 16.74 |
Bra018451.1-P | Field mustard | mitochondrion | 23.76 | 16.6 |
Bra004488.1-P | Field mustard | cytosol | 6.03 | 8.27 |
Bra004487.1-P | Field mustard | mitochondrion | 6.21 | 6.62 |
Bra000388.1-P | Field mustard | cytosol | 2.84 | 5.16 |
Protein Annotations
Gene3D:1.25.40.10 | MapMan:35.1 | EnsemblPlantsGene:Bra017999 | EnsemblPlants:Bra017999.1 | EnsemblPlants:Bra017999.1-P | ncoils:Coil |
GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002885 | InterPro:IPR011990 | UniProt:M4DNB2 |
PFAM:PF01535 | PFAM:PF12854 | PFAM:PF13041 | PFAM:PF13812 | PFscan:PS51375 | PANTHER:PTHR24015 |
PANTHER:PTHR24015:SF237 | InterPro:Pentatricopeptide_repeat | SUPFAM:SSF81901 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI000253F224 |
SEG:seg | : | : | : | : | : |
Description
AT3G49240 (E=5e-230) emb1796 | emb1796 (embryo defective 1796); ATP binding
Coordinates
chrA06:-:9400838..9402532
Molecular Weight (calculated)
64308.4 Da
IEP (calculated)
5.070
GRAVY (calculated)
-0.445
Length
564 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFATQEEAA AERRRRKRRL SLEPSLNPLN RSPQQQQPHI TRPIQNPNIP KLPESLSALT GKRLHLHNHI LKLIHENDLE EAALYTRHSV YSNCRPTIFT
101: VNAVLTAQLR QSKYEAFLQL HGFINQAGIA ANIITYNLLF QAYLDVKKPE LALEHYKLFV DNAPLNPSVA TFRILVKGLV DNEKVEKAME IKEEMGVRGF
201: IADPVVYSYL MIGCGKGSDG GGVLNLYEEL KEKLGGFVED GVVYGPLMKG YFLKEMEEEA MECYEEVLGE ESKVKMSAVG YNYVLEALSE NGKFDEALKL
301: FEVMKKEHKP PRRLALNLGS FNVVVNGYCG EGKFEEAMEV FRGMGEFRCS PDTLSFNNVM NQMCGNGLLA EAEKLYIEMD EKNKVKPDEY TYGLLMDTCF
401: KEGKIDEGAA YYKTMAESSL RPNLAVYNRL QDQLVKSGKL DDARSFFVMM VSRLKMDDDA YKFIMRAFSE AGRLDEMLKI VAVMLDEDTV RVSEEIQEFV
501: KEELRKEGRE DDLQKLMDEK ERLKAEAKAR ELEAEEAKKR SIFNNIASIL PLKREEEKSE DDLG
101: VNAVLTAQLR QSKYEAFLQL HGFINQAGIA ANIITYNLLF QAYLDVKKPE LALEHYKLFV DNAPLNPSVA TFRILVKGLV DNEKVEKAME IKEEMGVRGF
201: IADPVVYSYL MIGCGKGSDG GGVLNLYEEL KEKLGGFVED GVVYGPLMKG YFLKEMEEEA MECYEEVLGE ESKVKMSAVG YNYVLEALSE NGKFDEALKL
301: FEVMKKEHKP PRRLALNLGS FNVVVNGYCG EGKFEEAMEV FRGMGEFRCS PDTLSFNNVM NQMCGNGLLA EAEKLYIEMD EKNKVKPDEY TYGLLMDTCF
401: KEGKIDEGAA YYKTMAESSL RPNLAVYNRL QDQLVKSGKL DDARSFFVMM VSRLKMDDDA YKFIMRAFSE AGRLDEMLKI VAVMLDEDTV RVSEEIQEFV
501: KEELRKEGRE DDLQKLMDEK ERLKAEAKAR ELEAEEAKKR SIFNNIASIL PLKREEEKSE DDLG
001: MSISKAAFLN HLQTLSRSYR HRVLPQPFLA VRYMSFATQE EAAAERRRRK RRLRMEPPVN SFNRSQQQQS QIPRPIQNPN IPKLPESVSA LVGKRLDLHN
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC
Arabidopsis Description
EMB1796Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M3A8]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.