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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 2
  • cytosol 3
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra002289.1-P
Bra020096.1-P

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY08118 Canola plastid 98.23 92.95
Bra019587.1-P Field mustard cytosol 78.19 78.47
Bra029944.1-P Field mustard mitochondrion, plastid 80.67 70.43
AT3G49240.1 Thale cress cytosol, plastid 77.84 69.79
KRH64444 Soybean mitochondrion 62.23 55.63
KRH53501 Soybean mitochondrion 61.88 55.22
PGSC0003DMT400023464 Potato plastid 59.57 51.53
VIT_16s0098g01840.t01 Wine grape plastid 58.51 50.54
HORVU3Hr1G052300.1 Barley plastid 11.52 48.51
Solyc03g083280.2.1 Tomato nucleus 42.91 47.64
GSMUA_Achr9P05870_001 Banana mitochondrion 47.16 41.5
Os11t0433600-01 Rice nucleus 34.75 40.25
GSMUA_Achr6P26580_001 Banana mitochondrion, plastid 46.81 40.18
EES03220 Sorghum mitochondrion, plastid 47.34 40.09
HORVU3Hr1G052280.1 Barley cytosol, plastid 46.63 39.67
Zm00001d044388_P001 Maize plastid 38.83 39.53
TraesCS3B01G244700.1 Wheat cytosol 46.63 39.08
TraesCS3A01G214000.1 Wheat cytosol 45.92 39.06
TraesCS3D01G216600.1 Wheat cytosol 45.74 38.91
TraesCS1B01G369200.1 Wheat mitochondrion 38.3 33.59
TraesCS1D01G357400.1 Wheat mitochondrion 37.06 32.86
EES19865 Sorghum mitochondrion 38.65 32.83
HORVU1Hr1G080900.3 Barley cytosol, plastid 38.48 32.39
TraesCS1A01G352600.1 Wheat cytosol 23.94 31.62
Zm00001d038733_P001 Maize mitochondrion 37.23 31.53
Os05t0534000-01 Rice cytosol 13.3 26.04
Bra019952.1-P Field mustard mitochondrion 24.82 17.09
Bra031706.1-P Field mustard mitochondrion 25.35 16.74
Bra018451.1-P Field mustard mitochondrion 23.76 16.6
Bra004488.1-P Field mustard cytosol 6.03 8.27
Bra004487.1-P Field mustard mitochondrion 6.21 6.62
Bra000388.1-P Field mustard cytosol 2.84 5.16
Protein Annotations
Gene3D:1.25.40.10MapMan:35.1EnsemblPlantsGene:Bra017999EnsemblPlants:Bra017999.1EnsemblPlants:Bra017999.1-Pncoils:Coil
GO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:IPR002885InterPro:IPR011990UniProt:M4DNB2
PFAM:PF01535PFAM:PF12854PFAM:PF13041PFAM:PF13812PFscan:PS51375PANTHER:PTHR24015
PANTHER:PTHR24015:SF237InterPro:Pentatricopeptide_repeatSUPFAM:SSF81901TIGRFAMs:TIGR00756InterPro:TPR-like_helical_dom_sfUniParc:UPI000253F224
SEG:seg:::::
Description
AT3G49240 (E=5e-230) emb1796 | emb1796 (embryo defective 1796); ATP binding
Coordinates
chrA06:-:9400838..9402532
Molecular Weight (calculated)
64308.4 Da
IEP (calculated)
5.070
GRAVY (calculated)
-0.445
Length
564 amino acids
Sequence
(BLAST)
001: MSFATQEEAA AERRRRKRRL SLEPSLNPLN RSPQQQQPHI TRPIQNPNIP KLPESLSALT GKRLHLHNHI LKLIHENDLE EAALYTRHSV YSNCRPTIFT
101: VNAVLTAQLR QSKYEAFLQL HGFINQAGIA ANIITYNLLF QAYLDVKKPE LALEHYKLFV DNAPLNPSVA TFRILVKGLV DNEKVEKAME IKEEMGVRGF
201: IADPVVYSYL MIGCGKGSDG GGVLNLYEEL KEKLGGFVED GVVYGPLMKG YFLKEMEEEA MECYEEVLGE ESKVKMSAVG YNYVLEALSE NGKFDEALKL
301: FEVMKKEHKP PRRLALNLGS FNVVVNGYCG EGKFEEAMEV FRGMGEFRCS PDTLSFNNVM NQMCGNGLLA EAEKLYIEMD EKNKVKPDEY TYGLLMDTCF
401: KEGKIDEGAA YYKTMAESSL RPNLAVYNRL QDQLVKSGKL DDARSFFVMM VSRLKMDDDA YKFIMRAFSE AGRLDEMLKI VAVMLDEDTV RVSEEIQEFV
501: KEELRKEGRE DDLQKLMDEK ERLKAEAKAR ELEAEEAKKR SIFNNIASIL PLKREEEKSE DDLG
Best Arabidopsis Sequence Match ( AT3G49240.1 )
(BLAST)
001: MSISKAAFLN HLQTLSRSYR HRVLPQPFLA VRYMSFATQE EAAAERRRRK RRLRMEPPVN SFNRSQQQQS QIPRPIQNPN IPKLPESVSA LVGKRLDLHN
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC
Arabidopsis Description
EMB1796Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M3A8]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.