Factsheet for TraesCS3B01G244700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 2
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G015500.1
TraesCS3D01G013000.1
TraesCS6A01G144800.1
TraesCS6B01G173000.2
TraesCS6D01G133800.1
TraesCS7A01G518200.1
TraesCS7B01G434300.1
TraesCS7D01G508100.1
TraesCSU01G044500.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49240.1	TraesCS3A01G015500.1	AT5G20280.1	21798944
AT3G49240.1	TraesCS3D01G013000.1	AT5G20280.1	21798944
AT3G49240.1	TraesCS6A01G144800.1	AT5G20280.1	21798944
AT3G49240.1	TraesCS6B01G173000.2	AT5G20280.1	21798944
AT3G49240.1	TraesCS6D01G133800.1	AT5G20280.1	21798944
AT3G49240.1	TraesCS7A01G518200.1	AT5G20280.1	21798944
AT3G49240.1	TraesCS7B01G434300.1	AT5G20280.1	21798944
AT3G49240.1	TraesCS7D01G508100.1	AT5G20280.1	21798944
AT3G49240.1	TraesCSU01G044500.2	AT5G20280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G214000.1	Wheat	cytosol	93.16	94.57
HORVU3Hr1G052280.1	Barley	cytosol, plastid	92.72	94.12
TraesCS3D01G216600.1	Wheat	cytosol	92.57	93.97
Os11t0433600-01	Rice	nucleus	57.95	80.08
HORVU3Hr1G052300.1	Barley	plastid	15.75	79.1
EES03220	Sorghum	mitochondrion, plastid	75.19	75.98
Zm00001d044388_P001	Maize	plastid	61.66	74.91
GSMUA_Achr9P05870_001	Banana	mitochondrion	57.5	60.37
GSMUA_Achr6P26580_001	Banana	mitochondrion, plastid	57.5	58.9
KRH53501	Soybean	mitochondrion	46.21	49.21
VIT_16s0098g01840.t01	Wine grape	plastid	47.7	49.16
TraesCS1B01G369200.1	Wheat	mitochondrion	46.95	49.14
KRH64444	Soybean	mitochondrion	44.87	47.86
Bra019587.1-P	Field mustard	cytosol	39.52	47.33
Bra017999.1-P	Field mustard	cytosol	39.08	46.63
PGSC0003DMT400023464	Potato	plastid	44.87	46.32
CDY00193	Canola	plastid	39.82	46.13
CDY08118	Canola	plastid	39.82	44.97
CDX86985	Canola	mitochondrion	39.08	44.65
CDX83077	Canola	mitochondrion, plastid	41.6	44.59
AT3G49240.1	Thale cress	cytosol, plastid	41.6	44.52
Solyc03g083280.2.1	Tomato	nucleus	32.84	43.5
CDX68524	Canola	cytosol, mitochondrion, plastid	40.56	43.47
Bra029944.1-P	Field mustard	mitochondrion, plastid	41.46	43.19
CDY05914	Canola	cytosol	7.43	33.11
CDY05913	Canola	cytosol	21.4	29.57
TraesCS2B01G554300.1	Wheat	nucleus	25.26	16.87
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	24.37	16.17

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF237	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	EnsemblPlantsGene:TraesCS3B01G244700	EnsemblPlants:TraesCS3B01G244700.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr3B:-:387426155..387436694

Molecular Weight (calculated)

74550.0 Da

IEP (calculated)

5.154

GRAVY (calculated)

-0.365

Length

673 amino acids

Sequence
(BLAST)

001: MALSKPLFSR LLPFSLRLLP FSLRLPVRSQ HRLLCLATPT DLPDAPTDAS AERRRRKRRL RVEPPSSRGP TPQRTPGGPR PSSNPNALKL PEPASVLSGK
101: RLDLHRRILT LVRENDLDEA ALLTRHSIYS NCRPTVFTCN TVLAALLRQA RYADLLSLHR FVTQASVAPT VATHNLLLQA YCDCRRPETA LEHFRLLLRD
201: DSPVLPSPTT YRILARSLAE NGKLDLALEL KDGMLERGLI APDPQVYAFV MGGFVNAGDG DTAVSLYEEL KEKLGGGLIL DGVVYGNLMK GYFLKGMEKE
301: AMDCYTEVLG EGSKVRFEAV SYNMVLDALG RNGRLDDAVE LFDRMCKEHD PPRRIAVNLG SFNVMVDAYC HVERFQDAVE VFGKMGEKSC TPDALSYNSL
401: IDWLGKNELV GEAEGLYKEM GERGINPDEY TYVLLIESCF RVGNVDDAVG YFNKMFDVGL RPNANAFNKV ISVLVKVDRI DEAQRFFDLM PEREVKPNIA
501: SYESLLRAYI NVARLDDAIK MAKGILLDES IVFTDELKAL LDGALQKEGR NGDMTKLYED VETEKAEAAA RAAEEKARAE ALAKEEEEKK KAEAKAKEES
601: AARASRAAID AVLCRKSGAE NGKSSQEMSV EEAQVVESHS DAVGAAEQNE GDDQKKESGD AASQIETEHL QEG

Best Arabidopsis Sequence Match ( AT3G49240.1 )
(BLAST)

001: MSISKAAFLN HLQTLSRSYR HRVLPQPFLA VRYMSFATQE EAAAERRRRK RRLRMEPPVN SFNRSQQQQS QIPRPIQNPN IPKLPESVSA LVGKRLDLHN
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC

Arabidopsis Description

EMB1796Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M3A8]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.