Factsheet for AT5G28340.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G28380.1	Thale cress	cytosol	73.1	81.54
AT3G60960.1	Thale cress	mitochondrion	54.71	59.06
CDY25066	Canola	cytosol	15.4	51.94
AT3G60980.1	Thale cress	mitochondrion	25.98	27.43
GSMUA_Achr10P...	Banana	mitochondrion, plastid	16.55	11.65
AT1G10270.1	Thale cress	mitochondrion	21.15	10.08
TraesCS2A01G524300.1	Wheat	mitochondrion	15.63	8.22
Os05t0365500-01	Rice	nucleus	17.01	8.12
Zm00001d032900_P001	Maize	mitochondrion	14.94	8.0
TraesCS2D01G527300.1	Wheat	mitochondrion	15.63	7.96
OQU78362	Sorghum	cytosol	12.41	7.88
TraesCS2A01G063500.1	Wheat	mitochondrion	16.09	7.45
OQU93028	Sorghum	mitochondrion	14.94	7.43
TraesCS2D01G061700.1	Wheat	golgi	16.09	7.37
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	16.09	6.9
TraesCS2B01G554300.1	Wheat	nucleus	15.86	6.85
HORVU2Hr1G011400.1	Barley	cytosol	11.95	6.49
AT3G49240.1	Thale cress	cytosol, plastid	8.28	5.72
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	11.49	5.72

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:832919	ProteinID:AED93790.1	ArrayExpress:AT5G28340	EnsemblPlantsGene:AT5G28340
RefSeq:AT5G28340	TAIR:AT5G28340	RefSeq:AT5G28340-TAIR-G	EnsemblPlants:AT5G28340.1	TAIR:AT5G28340.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016787	GO:GO:0031425	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	RefSeq:NP_198186.3
PFAM:PF01535	PFAM:PF12854	PO:PO:0000293	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF393
InterPro:Pentatricopeptide_repeat	UniProt:Q303Z7	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000034F27D	:

Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q303Z7]

Coordinates

chr5:+:10314118..10317160

Molecular Weight (calculated)

48861.0 Da

IEP (calculated)

7.024

GRAVY (calculated)

-0.190

Length

435 amino acids

Sequence
(BLAST)

001: MGSTGSCHED IRTRDACGSV MPLKSLKRTK DSQPEELLCK YCSKLRKSNQ YCGICKRIWH PPDDRDWVCC DGCNVWDGFM LNATTLRMSA LSVVHVGQGS
101: SHQVNGKGIQ AAEPKSGSLV LIKGPTKQSF VGYDEAISLF DYFFNESQTL PNMLSCNLII KAHCDQGSVD HALELYRHIL LDGSLAPGIE TYRILTKALV
201: GAKRLDEACD VVRSMSRCDF AVYDILIRGF LDKGKFVRAS QIFEELKGPN SKLPWRNYHK AIAIFNVSFM DYWFKQGKDE EAMEIFATLE HAELLNTISG
301: NGVLKCLVEH GRKTEAWELF LDMIEICDSE TVGIIMSKEG FFGEKTIPFE RVRRTCYTRM IASLCQQGNM LEAEKLFADM FADVDGDDLL AGPDVSTFRA
401: MINGYVKVGR VDDAIKTLNK MKISNLRKLS IHQAT

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.