CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80068	Canola	mitochondrion	62.36	64.84
CDY25066	Canola	cytosol	9.27	39.53
CDX95410	Canola	cytosol	3.09	32.69
CDY53878	Canola	mitochondrion	7.45	28.47
CDY53879	Canola	cytosol	9.09	27.78
CDY33104	Canola	mitochondrion	18.0	26.9
CDY25062	Canola	mitochondrion	17.64	26.72
CDX95653	Canola	mitochondrion	19.45	26.68
CDY37773	Canola	mitochondrion	19.27	24.94
CDX80067	Canola	mitochondrion	19.27	24.37
CDY10671	Canola	mitochondrion	17.27	23.81
CDX71714	Canola	cytosol	9.82	22.22
CDY09648	Canola	extracellular, mitochondrion, plastid	12.36	18.04
GSMUA_Achr10P...	Banana	mitochondrion, plastid	13.27	11.81
CDX93444	Canola	mitochondrion	15.82	11.43
CDY34898	Canola	mitochondrion	16.73	10.77
CDX94912	Canola	mitochondrion	16.18	10.75
CDY31037	Canola	mitochondrion	15.64	10.66
CDY20645	Canola	mitochondrion	15.64	10.47
CDY21873	Canola	cytosol	2.0	10.19
CDY65945	Canola	cytosol	11.82	9.57
TraesCS2A01G524300.1	Wheat	mitochondrion	12.18	8.1
Zm00001d032900_P001	Maize	mitochondrion	11.64	7.87
TraesCS2D01G527300.1	Wheat	mitochondrion	12.18	7.85
OQU93028	Sorghum	mitochondrion	12.0	7.54
Os05t0365500-01	Rice	nucleus	12.0	7.24
TraesCS2D01G061700.1	Wheat	golgi	12.36	7.16
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	12.36	6.71
TraesCS2B01G554300.1	Wheat	nucleus	12.18	6.65
TraesCS2A01G063500.1	Wheat	mitochondrion	11.27	6.6
CDY00193	Canola	plastid	6.91	6.54
CDY08118	Canola	plastid	6.55	6.04
OQU78362	Sorghum	cytosol	7.45	5.99
CDX68524	Canola	cytosol, mitochondrion, plastid	6.73	5.89
CDX86985	Canola	mitochondrion	6.0	5.6
CDX83077	Canola	mitochondrion, plastid	6.36	5.57
HORVU2Hr1G011400.1	Barley	cytosol	6.91	4.74
CDY05914	Canola	cytosol	1.27	4.64
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	6.55	4.12
CDY05913	Canola	cytosol	2.73	3.08

Protein Annotations

EnsemblPlants:CDY37774	EnsemblPlantsGene:GSBRNA2T00064708001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF393
PFAM:PF01535	PFscan:PS51375	ProteinID:CDY37774	ProteinID:CDY37774.1	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI0004EC326D	UniProt:A0A078HKD5	MapMan:35.1	:	:	:

Description

BnaC04g00510DBnaC04g00510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HKD5]

Coordinates

chrLK032408:+:11211..12863

Molecular Weight (calculated)

63428.9 Da

IEP (calculated)

6.346

GRAVY (calculated)

-0.345

Length

550 amino acids

Sequence
(BLAST)

001: MMMMMLLRRR TLLKSSFLNR HISSRSATAT WNHYEDEKDL YTTVRSLIRS SELNKAVEYA RSPVAEKSRM ATRVAICELV APALDDAKRY KDVLSLILDS
101: RLYNNSLYCR YLIRKAFEKE RLSSDAKEEA EAKRHELNKC LVSNPPPYPI ILGGDVIISP EEEPPKNQYY CEKHLYSKVR FLIQNLSDLD TAVEYARFTA
201: FATSRTETTT ATCDLIIAAL CEAKRYMDAY HLFHYFFNQS NISLSVDCCN HIVKALCDDG HAHVALQLHH HIRGGYDDHA LLDYQTYRIL TKALYLSGKY
301: DEALDLVKDI FLLKNPDEYD SEFLDQKDFD KAWALCCEEF ISSKDGNNNN VGYPTVTKTA VTVSLIEYHF SKGKEDKAME IYTCLVAETS GKIEDASKRP
401: LLDVLFKYGK ETEAWSLVEN HHLIEDRPLH IMKQNLTMHE LFCCDLRMTK ESIEKFEKAR QMQDFVTFKF NHAPYSNVIA KCCEDENTLP HAKWILAESL
501: NVCDPWAYKL STFEEMINAY LKAGRLDDAL ETANMMVDAN LRLVSILMKS

Best Arabidopsis Sequence Match ( AT3G60980.1 )
(BLAST)

001: MSLIGRLNLG RRFCTAVPRR SEDIMSNPDC RPSDLCLRVS YLIRCVGDLD TAAKYARLAV FTSIKSESTT TICQSIIGGM LRDKRLKDAY DLYEFFFNQH
101: NLRPNSHCWN YIIESGFQQG LVNDALHFHH RCINSGQVHD YPSDDSFRIL TKGLVHSGRL DQAEAFLRGR TVNRTTYPDH VAYNNLIRGF LDLGNFKKAN
201: LVLGEFKRLF LIALSETKDD LHHSNYENRV AFLMATFMEY WFKQGKQVEA MECYNRCVLS NRLLVCAETG NALLKVLLKY GEKKNAWALY HELLDKNGTG
301: KGCLDSDTIK IMVDECFDMG WFSEAMETYK KARPKNDYLS DKYIITRFCE NRMLSEAESV FVDSLADDFG YIDVNTYKTM IDAYVKAGRI HDAIKTSNKM
401: IDATLKEVSH LF

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g60980, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LEX5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.