Factsheet for GSMUA_Achr7P17650_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P00150_001
GSMUA_Achr1P11210_001
GSMUA_Achr2P17930_001
GSMUA_Achr4P04810_001
GSMUA_Achr4P27580_001
GSMUA_Achr4P29990_001
GSMUA_Achr5P12100_001
GSMUA_Achr5P20730_001
GSMUA_Achr6P01260_001
GSMUA_Achr6P06320_001
GSMUA_Achr6P26580_001
GSMUA_Achr6P32500_001
GSMUA_Achr7P11350_001
GSMUA_Achr9P05870_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06510.1	GSMUA_Achr2P17930_001	AT1G32580.1	21798944
AT1G06510.1	GSMUA_Achr4P27580_001	AT1G32580.1	21798944
AT1G06510.1	GSMUA_Achr6P01260_001	AT1G32580.1	21798944
AT1G06510.1	GSMUA_Achr6P06320_001	AT2G32840.1	21798944
AT1G06510.1	GSMUA_Achr7P11350_001	AT2G32840.1	21798944
AT1G06510.1	GSMUA_Achr11P...	AT3G15360.1	21798944
AT1G06510.1	GSMUA_Achr1P00150_001	AT3G15360.1	21798944
AT1G06510.1	GSMUA_Achr4P29990_001	AT3G15360.1	21798944
AT1G06510.1	GSMUA_Achr5P12100_001	AT3G15360.1	21798944
AT1G06510.1	GSMUA_Achr5P20730_001	AT3G15360.1	21798944
AT1G06510.1	GSMUA_Achr6P26580_001	AT3G49240.1	21798944
AT1G06510.1	GSMUA_Achr9P05870_001	AT3G49240.1	21798944
AT1G06510.1	GSMUA_Achr4P04810_001	AT3G60360.1	21798944
AT1G06510.1	GSMUA_Achr6P32500_001	AT3G60360.1	21798944
AT1G06510.1	GSMUA_Achr1P11210_001	AT5G49210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015506.1-P	Field mustard	plastid	36.27	37.73
CDY06646	Canola	plastid	35.92	37.36
VIT_12s0028g00200.t01	Wine grape	mitochondrion	36.97	36.59
AT1G06510.1	Thale cress	plastid	35.56	36.46
Os01t0696000-02	Rice	plastid	38.73	36.18
PGSC0003DMT400054832	Potato	cytosol	36.62	35.86
Solyc10g007730.2.1	Tomato	cytosol	36.62	35.86
CDY10205	Canola	plastid	34.86	35.48
KRH73638	Soybean	plastid	35.56	34.47
TraesCS3A01G257600.1	Wheat	plastid	35.21	34.13
TraesCS3D01G257600.1	Wheat	mitochondrion, plastid	34.15	33.8
TraesCS3B01G290400.1	Wheat	plastid	34.51	33.45
KRH14485	Soybean	plastid	34.15	32.77
KXG33191	Sorghum	mitochondrion	35.92	32.69
HORVU3Hr1G065350.1	Barley	plastid	31.34	30.9
Zm00001d043764_P005	Maize	mitochondrion	34.51	26.78

Protein Annotations

EnsemblPlants:GSMUA_Achr7P17650_001	EnsemblPlants:GSMUA_Achr7T17650_001	EnsemblPlantsGene:GSMUA_Achr7G17650_001	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	ncoils:Coil	PANTHER:PTHR37174	SEG:seg
UniParc:UPI000295D8A5	UniProt:M0TIF2	MapMan:35.2	:	:	:

Description

Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G17650_001]

Coordinates

chr7:+:20324424..20330035

Molecular Weight (calculated)

31800.0 Da

IEP (calculated)

6.413

GRAVY (calculated)

-0.559

Length

284 amino acids

Sequence
(BLAST)

001: MTLQYGGVVI PPWSIGGTPI RARKTTAPFV VALCHPLHRD AGSRQLRIQL DQLRAEAEAT RSKANAARLR LMRLTEAAEN LRSRAAMSIQ VGKETEATEL
101: LIQKKKLMQA LKKSKNRIEV LDKLSSKINE AISLKETQLI GQVAIQPEDN ISDSCGQIHF VSPKEDTVEV SKSKDSSILS EQCEHQDHDA GNYEDKPSGD
201: SGQPTFLASV SSDMSNFAKM VDSSEGFHEH ILENIDMQLK LLETDIENFL RSQSMTEETK QKQMNEKLEK LSEILKDVLS IRER

Best Arabidopsis Sequence Match ( AT1G06510.1 )
(BLAST)

001: MVTTTIGGVP VVIAQSRRIP TSLRCFSATA NSDLLRSQLD RLHAEAESTR AKANSNRLRL LRLSEAAENL REQAAVNVRT GKENDARDLL LQKKKVMQAL
101: DKAKARIELL DTLSSKLNEA ISVKETQLIG NISLDLEEDG ENTSGGIHIV SPKPESTEDG VENDHTHLDS EGIQLIERNV EDYQELLDTN NNVLEDVSIG
201: SILKEVSSYE SFLENLDQKL SRIEAELVTV VNVASLVLNH EDKPKNLKVQ QTAEILEEIR RVRERIANII CKEANIS

Arabidopsis Description

Forkhead-associated domain protein [Source:UniProtKB/TrEMBL;Acc:Q84K72]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.