CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71815
CDX75826
CDX79885
CDX82437
CDX86248
CDX86985
CDY00193
CDY05913
CDY05914
CDY08118
CDY12159
CDY33924
CDY41170
CDY52552
CDY53501
CDY56435
CDY56997
CDY58906
CDY70877

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06510.1	CDY12159	AT2G32840.1	21798944
AT1G06510.1	CDY52552	AT2G32840.1	21798944
AT1G06510.1	CDX79885	AT2G42260.1	21798944
AT1G06510.1	CDY53501	AT2G42260.1	21798944
AT1G06510.1	CDX75826	AT3G15360.1	21798944
AT1G06510.1	CDX82437	AT3G15360.1	21798944
AT1G06510.1	CDX86985	AT3G49240.1	21798944
AT1G06510.1	CDY00193	AT3G49240.1	21798944
AT1G06510.1	CDY05913	AT3G49240.1	21798944
AT1G06510.1	CDY05914	AT3G49240.1	21798944
AT1G06510.1	CDY08118	AT3G49240.1	21798944
AT1G06510.1	CDX71815	AT3G60360.1	21798944
AT1G06510.1	CDY41170	AT3G60360.1	21798944
AT1G06510.1	CDY56997	AT3G60360.1	21798944
AT1G06510.1	CDY58906	AT3G60360.1	21798944
AT1G06510.1	CDX86248	AT5G49210.1	21798944
AT1G06510.1	CDY33924	AT5G49210.1	21798944
AT1G06510.1	CDY56435	AT5G49210.1	21798944
AT1G06510.1	CDY70877	AT5G49210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06646	Canola	plastid	88.17	90.11
AT1G06510.1	Thale cress	plastid	74.91	75.45
VIT_12s0028g00200.t01	Wine grape	mitochondrion	51.25	49.83
PGSC0003DMT400054832	Potato	cytosol	44.8	43.1
Solyc10g007730.2.1	Tomato	cytosol	44.09	42.41
KRH73638	Soybean	plastid	43.73	41.64
KRH14485	Soybean	plastid	40.86	38.51
GSMUA_Achr7P17650_001	Banana	plastid	35.48	34.86
Os01t0696000-02	Rice	plastid	32.26	29.61
TraesCS3A01G257600.1	Wheat	plastid	30.82	29.35
TraesCS3B01G290400.1	Wheat	plastid	30.82	29.35
TraesCS3D01G257600.1	Wheat	mitochondrion, plastid	30.11	29.27
HORVU3Hr1G065350.1	Barley	plastid	27.96	27.08
KXG33191	Sorghum	mitochondrion	28.32	25.32
Zm00001d043764_P005	Maize	mitochondrion	29.39	22.4

Protein Annotations

EnsemblPlants:CDY10205	EnsemblPlantsGene:GSBRNA2T00032025001	ncoils:Coil	PANTHER:PTHR37174	ProteinID:CDY10205	ProteinID:CDY10205.1
SEG:seg	UniParc:UPI0004EE03AB	UniProt:A0A078F6T0	MapMan:35.2	:	:

Description

BnaC05g04480DBnaC05g04480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F6T0]

Coordinates

chrLK032001:+:542770..544033

Molecular Weight (calculated)

30816.4 Da

IEP (calculated)

5.280

GRAVY (calculated)

-0.464

Length

279 amino acids

Sequence
(BLAST)

001: MVTTRSVVGA PLVVARSRRI PTTLKCFAST ANSELLRSQL DRLHAEAEST RAKANSNRLR LLRLSEAAEN LRRQASLHVQ TGKENDAREL LLQKKKVMQA
101: LDKAKARIEL LDTLSSKLNE AISVKETQLI GNISLDLQVD SDNTSDGVHI VSPKPESTEE GHGNDQTDLG SQESQLIENN FEEHQETVGG TDNHALEEAL
201: TGSIFSEVSS YESFLENLDQ KLGRIEGELV TVVNVASLVL SHEDKPKNLK VQQTSEILEE VRCVRQRIAS IICKEANIS

Best Arabidopsis Sequence Match ( AT1G06510.1 )
(BLAST)

001: MVTTTIGGVP VVIAQSRRIP TSLRCFSATA NSDLLRSQLD RLHAEAESTR AKANSNRLRL LRLSEAAENL REQAAVNVRT GKENDARDLL LQKKKVMQAL
101: DKAKARIELL DTLSSKLNEA ISVKETQLIG NISLDLEEDG ENTSGGIHIV SPKPESTEDG VENDHTHLDS EGIQLIERNV EDYQELLDTN NNVLEDVSIG
201: SILKEVSSYE SFLENLDQKL SRIEAELVTV VNVASLVLNH EDKPKNLKVQ QTAEILEEIR RVRERIANII CKEANIS

Arabidopsis Description

Forkhead-associated domain protein [Source:UniProtKB/TrEMBL;Acc:Q84K72]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.