CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH41811
KRH60516
KRH68073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25780.1	KRH41811	AT3G56150.1	11029466
AT5G25780.1	KRH60516	AT3G56150.1	11029466
AT5G25780.1	KRH68073	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71216	Soybean	nucleus	74.36	11.2
KRH50214	Soybean	nucleus	73.08	11.03
KRH75983	Soybean	cytosol	6.41	3.85
Bra009732.1-P	Field mustard	cytosol	14.1	2.17
GSMUA_Achr11P...	Banana	cytosol	16.67	1.87
KRH61614	Soybean	endoplasmic reticulum	14.1	1.85
TraesCS6B01G307400.1	Wheat	cytosol	15.38	1.74
TraesCS5A01G442500.1	Wheat	cytosol, golgi	15.38	1.68
Solyc01g088370.2.1	Tomato	nucleus, plastid	15.38	1.67
PGSC0003DMT400004200	Potato	cytosol	15.38	1.67
KRH64883	Soybean	endoplasmic reticulum	15.38	1.67
EER91898	Sorghum	cytosol	15.38	1.67
TraesCS4A01G232600.1	Wheat	cytosol	15.38	1.66
HORVU5Hr1G106440.1	Barley	cytosol	15.38	1.66
HORVU4Hr1G014100.3	Barley	cytosol	15.38	1.66
TraesCS4D01G081300.1	Wheat	cytosol, nucleus	15.38	1.66
TraesCS5B01G446600.1	Wheat	cytosol	15.38	1.66
TraesCS5D01G449900.2	Wheat	cytosol, nucleus, unclear	15.38	1.66
TraesCS4B01G083200.1	Wheat	cytosol	14.1	1.56
KRH48727	Soybean	endoplasmic reticulum	14.1	1.53
Os10t0569200-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	14.1	1.53
AT5G25780.1	Thale cress	cytosol	12.82	1.4
Bra032059.1-P	Field mustard	cytosol	12.82	1.4
Bra007832.1-P	Field mustard	cytosol	12.82	1.4
Zm00001d030011_P001	Maize	plasma membrane	12.82	1.39
AT5G27640.2	Thale cress	cytosol	12.82	1.36
HORVU5Hr1G008250.6	Barley	cytosol, mitochondrion, plastid	15.38	1.35
AT1G49015.1	Thale cress	cytosol	2.56	0.88
CDY66663	Canola	mitochondrion	1.28	0.56
TraesCS6D01G406100.1	Wheat	cytosol	2.56	0.44
VIT_04s0008g07060.t01	Wine grape	mitochondrion	0.0	0.0

Protein Annotations

MapMan:35.2	EMBL:ACUP02002014	EnsemblPlantsGene:GLYMA_03G132500	GO:GO:0000049	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0003743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0006413
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0022627	GO:GO:0043022	UniProt:K7KES3	EnsemblPlants:KRH66844	ProteinID:KRH66844	ProteinID:KRH66844.1
UniParc:UPI00023C20EB	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:34743143..34749472

Molecular Weight (calculated)

8690.4 Da

IEP (calculated)

9.633

GRAVY (calculated)

-0.204

Length

78 amino acids

Sequence
(BLAST)

1: MATKSNLLIS VYDRRTAKEI WAFEVPNAIA AALSPNGTYF QTFQKPLAPQ EKNVTLWSIE IGATVYQQSQ KNMTTPVA

Best Arabidopsis Sequence Match ( AT1G73180.2 )
(BLAST)

001: MSSSPSLEIL VREAEGFTVW NGPPFTNGQP TLKLERVSCS NTKFSVDGSK LMAMKSDGVI SIYDATSLTE VRSFTIANVT AAELSPCGTY LQTFQKPTTP
101: QEKNVSIWNT ETGDLAHSHY QKSITKASWP SIRFCPDESS ACRLATNEVQ FFDPKDFSKG ITSRIRVPGI AAFELSKTPA SHVAVFVPES KGSPGSVQIF
201: GCGEELQSQP SARRSFFRCS SVQFSWNHGS TGLLVVVQSD VDKTNQSYYG ETKLHYLTID GTHEGLVPLR KEGPVHDVQW SFSGSEFAVV YGFMPACVTI
301: FDKNCKPLME LGEGPYNTLR WNPKGRVLCV AGFGNLPGDM AFWDVVNKKQ LGSNKAEWSV TSEWSPDGRY FLTASTAPRR QIDNGMKIFN YDGKRYYKKM
401: FERLYQAEWK PESPERFGDI SELIKSVESL KLGEGKSQGQ GSAQKKTIAP NPIAQKPAAY RPPHAKHAAA VQAEVTQQLF NNHP

Arabidopsis Description

Eukaryotic translation initiation factor 2A [Source:UniProtKB/TrEMBL;Acc:Q9CAT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.