Factsheet for Bra032059.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007220.1-P
Bra022520.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25780.1	Bra007220.1-P	AT3G56150.1	11029466
AT5G25780.1	Bra022520.1-P	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45599	Canola	cytosol	100.0	100.0
Bra007832.1-P	Field mustard	cytosol	94.82	94.82
AT5G25780.1	Thale cress	cytosol	90.06	90.06
AT5G27640.2	Thale cress	cytosol	92.02	89.02
PGSC0003DMT400004200	Potato	cytosol	75.07	74.76
Solyc01g088370.2.1	Tomato	nucleus, plastid	75.07	74.76
KRH64883	Soybean	endoplasmic reticulum	75.07	74.65
KRH48727	Soybean	endoplasmic reticulum	74.93	74.51
GSMUA_Achr11P...	Banana	cytosol	71.71	73.78
Os10t0569200-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	71.43	70.93
KRH61614	Soybean	endoplasmic reticulum	58.82	70.59
EER91898	Sorghum	cytosol	70.87	70.28
VIT_04s0008g07060.t01	Wine grape	mitochondrion	9.8	70.0
TraesCS5A01G442500.1	Wheat	cytosol, golgi	69.61	69.51
HORVU4Hr1G014100.3	Barley	cytosol	70.03	69.35
HORVU5Hr1G106440.1	Barley	cytosol	69.89	69.21
Zm00001d030011_P001	Maize	plasma membrane	69.75	69.17
TraesCS4B01G083200.1	Wheat	cytosol	68.07	68.94
TraesCS4D01G081300.1	Wheat	cytosol, nucleus	69.61	68.93
TraesCS5D01G449900.2	Wheat	cytosol, nucleus, unclear	69.61	68.93
TraesCS4A01G232600.1	Wheat	cytosol	69.47	68.79
TraesCS5B01G446600.1	Wheat	cytosol	69.47	68.79
TraesCS6B01G307400.1	Wheat	cytosol	65.13	67.59
TraesCS6D01G406100.1	Wheat	cytosol	32.63	50.76
Bra009732.1-P	Field mustard	cytosol	27.45	38.66
HORVU5Hr1G008250.6	Barley	cytosol, mitochondrion, plastid	42.86	34.46
Bra003854.1-P	Field mustard	nucleus	12.18	16.96
KRH66844	Soybean	cytosol	1.4	12.82

Protein Annotations

MapMan:17.4.1.3.2	Gene3D:2.130.10.10	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra032059	EnsemblPlants:Bra032059.1	EnsemblPlants:Bra032059.1-P
InterPro:EIF3B	GO:GO:0001731	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0006446
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016282	GO:GO:0019538	GO:GO:0031369	GO:GO:0033290	InterPro:IPR000504	InterPro:IPR012677
InterPro:IPR015943	UniProt:M4ETC9	HAMAP:MF_03001	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF08662
PIRSF:PIRSF036424	PFscan:PS50102	PANTHER:PTHR14068	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	SUPFAM:SSF82171	InterPro:TIF_beta_prop-like	UniParc:UPI0002544D31	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:eIF3B_RRM
SEG:seg	:	:	:	:	:

Description

AT5G27640 (E=0.0) TIF3B1, EIF3B, ATEIF3B-1, EIF3B-1, ATTIF3B1 | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1); nucleic acid binding / translation initiation factor

Coordinates

chrA04:-:11174051..11177046

Molecular Weight (calculated)

82087.7 Da

IEP (calculated)

4.920

GRAVY (calculated)

-0.621

Length

714 amino acids

Sequence
(BLAST)

001: MANIDIDSRA AQLGIDWSQV NLDSIHLPPG EDFGIQSDDE GVYHDDQLEF DTGFGNIIVV DNLPVVPKAK FEKLENVLKK IYNQLGVIKE NGLWMPVDPD
101: TGVTLGYCFI EFNTPQEAQN AKEKTHGYKL DKSHIFAVNM FDDFDRLMNV KEEWEAPQTK PYVPGENLQK WLTDEKARDQ LVIRSGPDTE VLWNDPRQKN
201: TEPVHKRPYW TESYVQWSPL GTYLVTLHKQ GAAVWGGADT FTRLMRYQHN IVKLVDFSPG EKYLVTYHSQ EPSNPRDASK VEIKVFDVRT GRMMRDFKGS
301: ADEFSIGGPG GVAGASWPVF RWGGGKEDKY FAKLSKNTIS VYETETFGLI DKKSMKVDNV VDICWSPTDS ILSLFVPEQG GGNQPAKVAL VQIPSKVELR
401: QKNLFSVSDC KMYWQSSGEY LAVKVDRYTK TKKSTYSGFE LFRIKERDIP IEVLELDNKN DKIIAFAWEP KGHRFAVIHG DQPRPDVSFY TMKTAQHGGR
501: VTKLGTLKAK QANALFWSPS GKYIILAGLK NFNGQLEFFN VDEMETMATT EHFMATDIEW DPTGRYVATA VTSVHEMENG FTVWSFNGKL LYRVLKDHFF
601: QLAWRPRPAS FLSPEKEEEI AKNLRKYSKK YEAEDQDVSL LLSEQDREKR KALKEEWEKW VMQWKSLHEE EKLERQNLRD GEISDEEEDD EEAKEVKEVE
701: FEDVIDVTEE IVQE

Best Arabidopsis Sequence Match ( AT5G27640.1 )
(BLAST)

001: MEVVDIDARA AKLGIDWSQV NFDSIQLPPG EDFGIESDDE AVYQDDQSEF DTGFGNIIVV DHLPVVPKEK FEKLEGVVKK IYNQLGVIKE NGLWMPVDPD
101: TKMTLGYCFI EFNTPQEAQN AKEKSHGYKL DKSHIFAVNM FDDFDRLMNV KEEWEPPQAR PYVPGENLQK WLTDEKARDQ LVIRSGPDTE VFWNDTRQKA
201: PEPVHKRPYW TESYVQWSPL GTYLVTLHKQ GAAVWGGADT FTRLMRYQHS MVKLVDFSPG EKYLVTYHSQ EPSNPRDASK VEIKVFDVRT GRMMRDFKGS
301: ADEFSIGGPG GVAGASWPVF RWAGGKDDKY FAKLSKNTIS VYETETFSLI DKKSMKVDNV VDICWSPTDS ILSLFVPEQG GGNQPAKVAL VQIPSKVELR
401: QKNLFSVSDC KMYWQSSGEY LAVKVDRYTK TKKSTYSGFE LFRIKERDIP IEVLELDNKN DKIIAFAWEP KGHRFAVIHG DQPRPDVSFY SMKTAQNTGR
501: VSKLATLKAK QANALFWSPT GKYIILAGLK GFNGQLEFFN VDELETMATA EHFMATDIEW DPTGRYVATA VTSVHEMENG FTIWSFNGIM LYRILKDHFF
601: QLAWRPRPPS FLTAEKEEEI AKTLKKYSKK YEAEDQDVSL LLSEQDREKR KALKEEWEKW VMQWKSLHEE EKLVRQNLRD GEVSDVEEDE YEAKEVEFED
701: LIDVTEEIVQ ES

Arabidopsis Description

TIF3B1Eukaryotic translation initiation factor 3 subunit B [Source:UniProtKB/TrEMBL;Acc:F4K4D5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.