Factsheet for TraesCS5D01G298300.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G274500.1
TraesCS6B01G302000.1
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15000.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT3G15000.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT3G15000.1	TraesCS6D01G254800.1	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G289900.1	Wheat	nucleus	98.76	98.51
TraesCS5A01G291000.1	Wheat	mitochondrion	97.26	98.24
HORVU5Hr1G077020.3	Barley	mitochondrion	94.53	93.37
TraesCS7D01G263300.1	Wheat	mitochondrion	66.42	61.95
CDY20096	Canola	plastid	45.02	57.64
Bra021584.1-P	Field mustard	plastid	46.77	56.46
CDX97626	Canola	plastid	50.0	55.22
CDX82454	Canola	mitochondrion, plastid	52.99	54.76
CDX98522	Canola	plastid	50.5	54.72
CDX75801	Canola	mitochondrion, plastid	53.48	53.88
GSMUA_Achr6P08230_001	Banana	mitochondrion	53.98	53.58
AT3G15000.1	Thale cress	plastid	52.24	53.16
Bra027285.1-P	Field mustard	plastid	52.99	52.99
Solyc10g007180.2.1	Tomato	plastid	51.49	52.94
GSMUA_Achr10P...	Banana	mitochondrion	56.97	52.28
GSMUA_AchrUn_...	Banana	mitochondrion	52.49	52.23
Bra001578.1-P	Field mustard	plastid	47.76	51.75
PGSC0003DMT400039805	Potato	plastid	51.49	51.36
KRH27318	Soybean	nucleus	46.27	51.24
PGSC0003DMT400054809	Potato	mitochondrion	51.74	50.61
VIT_19s0014g01550.t01	Wine grape	plastid	52.49	50.12
KRH21995	Soybean	plastid	49.01	49.13
Solyc12g014230.1.1	Tomato	nucleus	52.24	48.95
TraesCS6D01G294000.1	Wheat	mitochondrion	28.11	44.84
CDY32326	Canola	cytosol	38.06	43.34
AT1G53260.1	Thale cress	cytosol	27.86	41.33
TraesCS2D01G434600.1	Wheat	plastid	20.9	39.07
TraesCS7D01G045100.1	Wheat	mitochondrion, plastid	21.39	37.07
TraesCS7D01G303900.1	Wheat	plastid	19.9	35.09
TraesCS6D01G007100.1	Wheat	mitochondrion	20.15	33.61
TraesCS4D01G104800.2	Wheat	mitochondrion	24.38	23.56

Protein Annotations

EnsemblPlants:TraesCS5D01G298300.2

EnsemblPlantsGene:TraesCS5D01G298300

PANTHER:PTHR31346

PANTHER:PTHR31346:SF4

SEG:seg

MapMan:16.12.5.1

Description

No Description!

Coordinates

chr5D:-:396138982..396142207

Molecular Weight (calculated)

42831.2 Da

IEP (calculated)

8.927

GRAVY (calculated)

-0.919

Length

402 amino acids

Sequence
(BLAST)

001: MASASRALLL SRASPLHAAA SRFLRPVAAA GSLLPAALVP SPAAAPWAAA RRFATQPANS SLRDSSPNWS NRPPKETILL DGCDFEHWLV VMEPPPGDGA
101: NPDVTRDEII DGYIKTLAQV VGSEDEARMK IYSVSTRHYF AFGALVSEEL SYKLKELPKV RWVLPDSYLD VRNKDYGGEP FIDGQAVPYD PKYHEEWVRN
201: NARANDRSRR NDRPRNFDRS RNFERRRENT QAYQSGPPNQ MPPHDAAPPS RGAQGPPPLS GAPPNYQPHA PNPQAGYAAG GGPNYPNAPP PPGYRGASAP
301: GYPAGNQGYQ GNPGGNMHNG PGPAYHSNNP GYQGGAPGGN PPPPFAGGNQ PPPYQGGGPS YGGGAPDYQG QPGGNPGYQG GGNYNNAAPP YEGRDGPGRN
401: YQ

Best Arabidopsis Sequence Match ( AT3G15000.1 )
(BLAST)

001: MATHTISRSI LCRPAKSLSF LFTRSFASSA PLAKSPASSL LSRSRPLVAA FSSVFRGGLV SVKGLSTQAT SSSLNDPNPN WSNRPPKETI LLDGCDFEHW
101: LVVVEPPQGE PTRDEIIDSY IKTLAQIVGS EDEARMKIYS VSTRCYYAFG ALVSEDLSHK LKELSNVRWV LPDSYLDVRN KDYGGEPFID GKAVPYDPKY
201: HEEWIRNNAR ANERNRRNDR PRNNDRSRNF ERRRENMAGG PPPQRPPMGG PPPPPHIGGS APPPPHMGGS APPPPHMGQN YGPPPPNNMG GPRHPPPYGA
301: PPQNNMGGPR PPQNYGGTPP PNYGGAPPAN NMGGAPPPNY GGGPPPQYGA VPPPQYGGAP PQNNNYQQQG SGMQQPQYQN NYPPNRDGSG NPYQG

Arabidopsis Description

MORF8Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LKA5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.