CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 7
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21995	Soybean	plastid	92.56	83.79
CDX97626	Canola	plastid	58.68	58.52
CDX98522	Canola	plastid	59.78	58.49
Bra027285.1-P	Field mustard	plastid	61.98	55.97
CDX82454	Canola	mitochondrion, plastid	59.78	55.78
CDY20096	Canola	plastid	47.93	55.41
CDX75801	Canola	mitochondrion, plastid	60.33	54.89
Solyc10g007180.2.1	Tomato	plastid	58.68	54.48
Bra021584.1-P	Field mustard	plastid	49.86	54.35
Bra001578.1-P	Field mustard	plastid	54.27	53.1
VIT_19s0014g01550.t01	Wine grape	plastid	61.16	52.73
PGSC0003DMT400054809	Potato	mitochondrion	59.5	52.55
PGSC0003DMT400039805	Potato	plastid	57.85	52.11
EER92767	Sorghum	mitochondrion	47.11	49.28
EER92766	Sorghum	mitochondrion	52.62	49.23
Os09t0509000-01	Rice	plastid	53.44	48.99
Solyc12g014230.1.1	Tomato	nucleus	57.58	48.72
Os09t0132600-01	Rice	mitochondrion	53.17	48.49
TraesCS5B01G290000.1	Wheat	mitochondrion, plastid	43.53	46.88
TraesCS5B01G289900.1	Wheat	nucleus	51.52	46.4
TraesCS5D01G298300.2	Wheat	mitochondrion	51.24	46.27
TraesCS5A01G291000.1	Wheat	mitochondrion	50.41	45.98
HORVU5Hr1G077020.3	Barley	mitochondrion	51.24	45.7
Zm00001d048291_P001	Maize	mitochondrion	51.52	45.61
GSMUA_Achr6P08230_001	Banana	mitochondrion	50.14	44.94
TraesCS7B01G160200.1	Wheat	mitochondrion	50.96	44.47
GSMUA_AchrUn_...	Banana	mitochondrion	49.04	44.06
TraesCS7A01G262500.1	Wheat	mitochondrion	50.41	43.99
GSMUA_Achr10P...	Banana	mitochondrion	52.34	43.38
CDY32326	Canola	cytosol	41.87	43.06
TraesCS7D01G263300.1	Wheat	mitochondrion	50.96	42.92
KRH50805	Soybean	mitochondrion	29.2	42.57
HORVU7Hr1G054850.2	Barley	plastid	50.69	42.49
KRH02286	Soybean	mitochondrion	28.65	42.11
AT1G53260.1	Thale cress	cytosol	31.13	41.7
KRH31686	Soybean	mitochondrion	24.52	39.91
KRG92352	Soybean	mitochondrion, plastid	24.52	37.55
KRH10700	Soybean	nucleus, plastid	20.94	34.23
KRH21628	Soybean	nucleus, plastid	20.94	33.78
KRH34443	Soybean	plastid	24.52	33.71
OQU89756	Sorghum	plastid	33.88	28.74
KRH26355	Soybean	mitochondrion	24.52	19.26
KRH44085	Soybean	mitochondrion, plastid	23.42	18.4

Protein Annotations

EMBL:ACUP02007798	EnsemblPlants:KRH27318	EnsemblPlantsGene:GLYMA_12G228400	EntrezGene:100802590	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016554	PANTHER:PTHR31346	PANTHER:PTHR31346:SF4	ProteinID:KRH27318
ProteinID:KRH27318.1	SEG:seg	UniParc:UPI0001BA8510	UniProt:I1LV52	MapMan:16.12.5.1	:

Description

hypothetical protein

Coordinates

chr12:-:38844933..38847241

Molecular Weight (calculated)

39514.3 Da

IEP (calculated)

9.898

GRAVY (calculated)

-0.807

Length

363 amino acids

Sequence
(BLAST)

001: MATQILSRIF PKTLTLAPFL FRSLTTAPSR PSLPALSFLR RISVAANPSL RRVLLPNAPS LRALSTRATT SSLNDPNPNW SNRPPKETIL LDGCDFEHWL
101: VVMEKPEGDP TRDDIIDSYI KTLAKVIGSE EEARMKIYSV STRHYFAFGA LVSEELSIKL KELPGVRWVL PDSYLNVKEK DYGGEPFING QAVPYDPKYH
201: EEWVRNNARA NERNRRNDRP RNADRSRNFE RRRENVVNRD MQGRPPMPNP GPNMGGPPPS NAGGYPPNNA GGYPPNNAGG YPPNNAGYAP PNAGGGYPPN
301: TGGGYGPGGG VPQNNYAGNM GGPPPNQNMG GFQPNAGWSN NAPSRDVPSR DMGGPPGGNP YSA

Best Arabidopsis Sequence Match ( AT3G15000.1 )
(BLAST)

001: MATHTISRSI LCRPAKSLSF LFTRSFASSA PLAKSPASSL LSRSRPLVAA FSSVFRGGLV SVKGLSTQAT SSSLNDPNPN WSNRPPKETI LLDGCDFEHW
101: LVVVEPPQGE PTRDEIIDSY IKTLAQIVGS EDEARMKIYS VSTRCYYAFG ALVSEDLSHK LKELSNVRWV LPDSYLDVRN KDYGGEPFID GKAVPYDPKY
201: HEEWIRNNAR ANERNRRNDR PRNNDRSRNF ERRRENMAGG PPPQRPPMGG PPPPPHIGGS APPPPHMGGS APPPPHMGQN YGPPPPNNMG GPRHPPPYGA
301: PPQNNMGGPR PPQNYGGTPP PNYGGAPPAN NMGGAPPPNY GGGPPPQYGA VPPPQYGGAP PQNNNYQQQG SGMQQPQYQN NYPPNRDGSG NPYQG

Arabidopsis Description

MORF8Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LKA5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.