CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21628	Soybean	nucleus, plastid	97.3	96.0
GSMUA_Achr8P33150_001	Banana	cytosol	53.6	85.61
CDY20996	Canola	cytosol	58.56	84.97
CDX97960	Canola	cytosol	58.56	84.42
CDY37239	Canola	cytosol	40.54	68.7
VIT_19s0014g04710.t01	Wine grape	plastid	70.72	68.56
Bra016835.1-P	Field mustard	plastid	69.82	66.81
AT1G11430.1	Thale cress	plastid	69.82	66.81
PGSC0003DMT400055883	Potato	plastid	67.57	66.37
Solyc02g079770.2.1	Tomato	plastid	67.12	65.93
TraesCS7A01G307000.1	Wheat	plastid	67.12	65.64
TraesCS7B01G207300.1	Wheat	plastid	67.12	65.35
Os08t0139100-01	Rice	plastid	67.12	65.07
TraesCS7D01G303900.1	Wheat	plastid	66.67	64.91
Zm00001d024674_P001	Maize	plastid	64.86	64.57
CDY49781	Canola	plastid	68.92	63.75
EES14516	Sorghum	plastid	64.41	63.56
CDY57037	Canola	mitochondrion	69.37	59.46
HORVU7Hr1G073170.2	Barley	plastid	67.57	59.29
Bra019853.1-P	Field mustard	plastid	68.02	56.13
KRG92352	Soybean	mitochondrion, plastid	35.14	32.91
KRH02286	Soybean	mitochondrion	35.14	31.58
KRH50805	Soybean	mitochondrion	34.23	30.52
KRH31686	Soybean	mitochondrion	30.63	30.49
KRH34443	Soybean	plastid	34.68	29.17
KRH27318	Soybean	nucleus	34.23	20.94
KRH21995	Soybean	plastid	34.68	19.2
KRH44085	Soybean	mitochondrion, plastid	39.64	19.05
KRH26355	Soybean	mitochondrion	39.19	18.83

Protein Annotations

EMBL:ACUP02009152	EnsemblPlants:KRH10700	EnsemblPlantsGene:GLYMA_15G064300	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016554	PANTHER:PTHR31346	PANTHER:PTHR31346:SF3	ProteinID:KRH10700	ProteinID:KRH10700.1
ProteinID:KRH10701.1	SEG:seg	UniParc:UPI000233B88E	UniProt:I1ME71	MapMan:16.12.5.1	:

Description

hypothetical protein

Coordinates

chr15:-:4885565..4887727

Molecular Weight (calculated)

25197.7 Da

IEP (calculated)

9.257

GRAVY (calculated)

-0.750

Length

222 amino acids

Sequence
(BLAST)

001: MATVTFSFSA KTLTLPYHPK TSISSFAPVT NLRLSHSIVT RTRNCNRIRA ALDGDFSAKR SNNNEQRETI MLPGCDYNHW LIVMEFPKDP APTREQMIDT
101: YLDTLATVLG SMEEAKKNMY AFSTTTYTGF QCTVDEATSE KFKGLPGVLW VLPDSYIDVK NKDYGGDKYI NGEIIPCKYP TYQPKRSAPK NESRRYERRR
201: DGPPPDRRRP RQEAAASDSS ST

Best Arabidopsis Sequence Match ( AT1G11430.1 )
(BLAST)

001: MASFTTTSSS SLLLKTLLPV SHLNRFSTLS GIRVGDSWTP LLRNISTAGS RRRVAIVKAA TVDSDYSSKR SNSNEQRETI MLPGCDYNHW LIVMEFPKDP
101: APSRDQMIDT YLNTLATVLG SMEEAKKNMY AFSTTTYTGF QCTIDEETSE KFKGLPGVLW VLPDSYIDVK NKDYGGDKYI NGEIIPCTYP TYQPKQRNNT
201: KYQSKRYERK RDGPPPPEQR KPRQEPAASD SS

Arabidopsis Description

MORF9Multiple organellar RNA editing factor 9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LPZ1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.