CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20996	Canola	cytosol	58.69	99.35
CDX97960	Canola	cytosol	55.98	94.16
AT1G11430.1	Thale cress	plastid	80.69	90.09
CDY49781	Canola	plastid	80.31	86.67
GSMUA_Achr8P33150_001	Banana	cytosol	45.17	84.17
CDY37239	Canola	cytosol	39.38	77.86
VIT_19s0014g04710.t01	Wine grape	plastid	63.32	71.62
KRH10700	Soybean	nucleus, plastid	59.46	69.37
KRH21628	Soybean	nucleus, plastid	59.46	68.44
PGSC0003DMT400055883	Potato	plastid	57.53	65.93
Solyc02g079770.2.1	Tomato	plastid	57.53	65.93
TraesCS7A01G307000.1	Wheat	plastid	56.76	64.76
Os08t0139100-01	Rice	plastid	57.14	64.63
EES14516	Sorghum	plastid	55.98	64.44
Zm00001d024674_P001	Maize	plastid	55.21	64.13
TraesCS7B01G207300.1	Wheat	plastid	55.98	63.6
TraesCS7D01G303900.1	Wheat	plastid	55.6	63.16
HORVU7Hr1G073170.2	Barley	plastid	56.76	58.1
CDX74079	Canola	cytosol	23.94	42.18
CDY34929	Canola	cytosol	22.01	40.71
CDY08033	Canola	mitochondrion	33.59	40.47
CDX79529	Canola	cytosol	18.15	38.84
CDY58181	Canola	cytosol	22.39	34.52
CDY37719	Canola	plastid	27.41	31.98
CDY19491	Canola	plastid	27.8	31.17
CDY23734	Canola	plastid	27.41	31.14
CDY17174	Canola	plastid	27.41	30.87
CDX84224	Canola	mitochondrion, plastid	27.03	30.43
CDY31675	Canola	plastid	27.41	30.34
CDY65831	Canola	mitochondrion, plastid	25.1	29.15
CDX79597	Canola	plastid	24.32	27.04
CDX72924	Canola	mitochondrion	18.53	26.23
CDY65020	Canola	mitochondrion	18.92	25.79
CDX96416	Canola	mitochondrion	18.92	25.79
CDX68262	Canola	mitochondrion	18.53	25.26
CDX98651	Canola	mitochondrion	29.34	23.53
CDX78969	Canola	mitochondrion	32.82	22.19
CDY50054	Canola	mitochondrion	32.05	21.84
CDY01629	Canola	mitochondrion	32.82	21.63
CDY20096	Canola	plastid	23.17	19.11
CDX84615	Canola	mitochondrion	13.13	18.99
CDX97626	Canola	plastid	26.64	18.96
CDX98522	Canola	plastid	26.64	18.6
CDX82454	Canola	mitochondrion, plastid	27.03	17.99
CDX75801	Canola	mitochondrion, plastid	27.41	17.79
CDY32326	Canola	cytosol	21.62	15.86
CDY60655	Canola	plastid	29.34	10.53

Protein Annotations

EnsemblPlants:CDY57037	EnsemblPlantsGene:GSBRNA2T00020442001	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016554	PANTHER:PTHR31346	PANTHER:PTHR31346:SF3	ProteinID:CDY57037	ProteinID:CDY57037.1	SEG:seg
UniParc:UPI0004EE7364	UniProt:A0A078J3J0	MapMan:16.12.5.1	:	:	:

Description

BnaC08g14930DBnaC08g14930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J3J0]

Coordinates

chrLK033542:+:12423..14391

Molecular Weight (calculated)

29583.1 Da

IEP (calculated)

9.791

GRAVY (calculated)

-0.764

Length

259 amino acids

Sequence
(BLAST)

001: MSFYRSLRRQ QVRKLSYPLP PRSLSPTAMA SFTTSSPSSS LLPKTLLPIT HLTRFPTLSI GKWNHPLLRS ISTAESRRRV AIVKAATVDS DYSSKRSSSN
101: EQRETIMLPG CDYNHWLIVM EFPKDPAPTR DQMIETYLNT LATVLGSMEE AKKNMYAFST TTYTGFQCTI DEETCEKFKG LPGVLWVLPD SYIDVKNKDY
201: GGDKYINGEI IPCTYPTYQP KQQRNNSKYQ SKRYERKRDG PPPEQQRKPR QEPAASDSS

Best Arabidopsis Sequence Match ( AT1G11430.1 )
(BLAST)

001: MASFTTTSSS SLLLKTLLPV SHLNRFSTLS GIRVGDSWTP LLRNISTAGS RRRVAIVKAA TVDSDYSSKR SNSNEQRETI MLPGCDYNHW LIVMEFPKDP
101: APSRDQMIDT YLNTLATVLG SMEEAKKNMY AFSTTTYTGF QCTIDEETSE KFKGLPGVLW VLPDSYIDVK NKDYGGDKYI NGEIIPCTYP TYQPKQRNNT
201: KYQSKRYERK RDGPPPPEQR KPRQEPAASD SS

Arabidopsis Description

MORF9Multiple organellar RNA editing factor 9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LPZ1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.