Factsheet for Zm00001d024674_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14516	Sorghum	plastid	91.48	90.67
CDX97960	Canola	cytosol	59.64	86.36
GSMUA_Achr8P33150_001	Banana	cytosol	53.81	86.33
CDY20996	Canola	cytosol	58.74	85.62
TraesCS7A01G307000.1	Wheat	plastid	80.72	79.3
TraesCS7B01G207300.1	Wheat	plastid	80.27	78.51
TraesCS7D01G303900.1	Wheat	plastid	78.48	76.75
Os08t0139100-01	Rice	plastid	77.58	75.55
CDY37239	Canola	cytosol	41.7	70.99
HORVU7Hr1G073170.2	Barley	plastid	80.27	70.75
VIT_19s0014g04710.t01	Wine grape	plastid	69.96	68.12
KRH10700	Soybean	nucleus, plastid	64.57	64.86
KRH21628	Soybean	nucleus, plastid	64.13	63.56
Bra016835.1-P	Field mustard	plastid	65.02	62.5
AT1G11430.1	Thale cress	plastid	65.02	62.5
PGSC0003DMT400055883	Potato	plastid	62.78	61.95
Solyc02g079770.2.1	Tomato	plastid	62.33	61.5
CDY49781	Canola	plastid	65.02	60.42
Bra019853.1-P	Field mustard	plastid	66.82	55.39
CDY57037	Canola	mitochondrion	64.13	55.21
Zm00001d026307_P001	Maize	mitochondrion	36.77	33.33
Zm00001d026243_P002	Maize	extracellular	32.29	33.18
Zm00001d045528_P001	Maize	mitochondrion	31.84	31.84
Zm00001d049043_P001	Maize	mitochondrion	41.7	22.68
Zm00001d048291_P001	Maize	mitochondrion	34.53	18.78

Protein Annotations

EntrezGene:100284899	MapMan:16.12.5.1	ProteinID:AQK41715.1	EMBL:BT063172	EMBL:BT065274	UniProt:C0P4F3
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009941	GO:GO:0009987
GO:GO:0016554	GO:GO:1900865	PANTHER:PTHR31346	PANTHER:PTHR31346:SF3	UniParc:UPI0001948E26	EnsemblPlantsGene:Zm00001d024674
EnsemblPlants:Zm00001d024674_P001	EnsemblPlants:Zm00001d024674_T001	SEG:seg	:	:	:

Description

Multiple organellar RNA editing factor 9 chloroplastic

Coordinates

chr10:+:83251939..83254248

Molecular Weight (calculated)

24611.1 Da

IEP (calculated)

9.407

GRAVY (calculated)

-0.598

Length

223 amino acids

Sequence
(BLAST)

001: MAASLPTTAA RLAAPAFAYR SPNAPSATAL PRAAAFPAIA VAAAPLRPRR APRPVAARAG GEERETILLP GCDYNHWLIV MEFPKDPAPT REQMIDTYLN
101: TLATVLGSME EAKKNMYAFS TTTYTGFQCT VDEETSEKFK GLPGVLWVLP DSYIDVKNKD YGGDKYVNGE IIPCTYPTYQ PKERRTSKYE SRRYERRRDG
201: PPAASRKPRQ QAPAQTQTES ASS

Best Arabidopsis Sequence Match ( AT1G11430.1 )
(BLAST)

001: MASFTTTSSS SLLLKTLLPV SHLNRFSTLS GIRVGDSWTP LLRNISTAGS RRRVAIVKAA TVDSDYSSKR SNSNEQRETI MLPGCDYNHW LIVMEFPKDP
101: APSRDQMIDT YLNTLATVLG SMEEAKKNMY AFSTTTYTGF QCTIDEETSE KFKGLPGVLW VLPDSYIDVK NKDYGGDKYI NGEIIPCTYP TYQPKQRNNT
201: KYQSKRYERK RDGPPPPEQR KPRQEPAASD SS

Arabidopsis Description

MORF9Multiple organellar RNA editing factor 9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LPZ1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.