CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05647
EES15089

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15000.1	EES05647	AT3G27960.1	21798944
AT3G15000.1	EES15089	AT5G10270.1	12678503
AT3G15000.1	EES15089	AT5G64960.1	12678503

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92766	Sorghum	mitochondrion	87.32	78.09
Os09t0509000-01	Rice	plastid	75.79	66.41
Os09t0132600-01	Rice	mitochondrion	71.47	62.31
CDX97626	Canola	plastid	52.74	50.27
CDX98522	Canola	plastid	52.74	49.33
GSMUA_AchrUn_...	Banana	mitochondrion	57.06	49.01
GSMUA_Achr6P08230_001	Banana	mitochondrion	56.48	48.4
Bra021584.1-P	Field mustard	plastid	45.53	47.45
CDY20096	Canola	plastid	42.65	47.13
KRH27318	Soybean	nucleus	49.28	47.11
CDX82454	Canola	mitochondrion, plastid	52.74	47.04
KRH21995	Soybean	plastid	53.6	46.38
GSMUA_Achr10P...	Banana	mitochondrion	57.64	45.66
CDX75801	Canola	mitochondrion, plastid	52.45	45.61
Solyc10g007180.2.1	Tomato	plastid	51.3	45.52
Bra027285.1-P	Field mustard	plastid	52.74	45.52
AT3G15000.1	Thale cress	plastid	51.3	45.06
Bra001578.1-P	Field mustard	plastid	47.26	44.2
PGSC0003DMT400039805	Potato	plastid	51.3	44.17
VIT_19s0014g01550.t01	Wine grape	plastid	53.31	43.94
EES12861	Sorghum	mitochondrion	30.84	43.85
PGSC0003DMT400054809	Potato	mitochondrion	51.59	43.55
Solyc12g014230.1.1	Tomato	nucleus	52.16	42.19
EES11377	Sorghum	mitochondrion, plastid	23.05	37.04
EER87743	Sorghum	mitochondrion	23.05	36.04
CDY32326	Canola	cytosol	36.31	35.69
AT1G53260.1	Thale cress	cytosol	26.22	33.58
EES14516	Sorghum	plastid	21.04	32.44
OQU89756	Sorghum	plastid	37.46	30.37
EES08356	Sorghum	mitochondrion	25.36	19.64

Protein Annotations

EnsemblPlants:EER92767	EnsemblPlantsGene:SORBI_3001G485700	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016554	PANTHER:PTHR31346	PANTHER:PTHR31346:SF4	ProteinID:EER92767	ProteinID:EER92767.1	RefSeq:XP_002465769.1
SEG:seg	unigene:Sbi.6085	UniParc:UPI0001A82A49	UniProt:C5WVV5	MapMan:16.12.5.1	:

Description

hypothetical protein

Coordinates

chr1:+:75649075..75652179

Molecular Weight (calculated)

37889.1 Da

IEP (calculated)

8.855

GRAVY (calculated)

-0.948

Length

347 amino acids

Sequence
(BLAST)

001: MASASRALHL SRALQGGRRI TTLLRPLAAT ESLLPAGAGA SAPGAGLRCF ATQPATSSLR DSSPNWINTR PSKEMILLDG CDFEHWLVVM EPPPGDPSNP
101: DIPRDEIIDS YIKTLAQVVG SEEEARQKIY SVSTRHYFAF GALVPEEVSY KLKEMPKVRW VLPDSYLNVQ TKDYGGEPFV NGEAVPYDPK FHEEWVRNNA
201: RANERSRRND RPRNFDRSRN FERRRGNMQN YQNRDGPLAQ GFNGPPPPPG QNQMPPHHGQ DNMPPPPPPP HAGGGQPNYD SQMPNPQAGY NTGGAPHYQQ
301: GGAPGYQGGP PGYQGGNQGY HGNPGAAYQG GPPGYPGGNP APPYPRR

Best Arabidopsis Sequence Match ( AT3G15000.1 )
(BLAST)

001: MATHTISRSI LCRPAKSLSF LFTRSFASSA PLAKSPASSL LSRSRPLVAA FSSVFRGGLV SVKGLSTQAT SSSLNDPNPN WSNRPPKETI LLDGCDFEHW
101: LVVVEPPQGE PTRDEIIDSY IKTLAQIVGS EDEARMKIYS VSTRCYYAFG ALVSEDLSHK LKELSNVRWV LPDSYLDVRN KDYGGEPFID GKAVPYDPKY
201: HEEWIRNNAR ANERNRRNDR PRNNDRSRNF ERRRENMAGG PPPQRPPMGG PPPPPHIGGS APPPPHMGGS APPPPHMGQN YGPPPPNNMG GPRHPPPYGA
301: PPQNNMGGPR PPQNYGGTPP PNYGGAPPAN NMGGAPPPNY GGGPPPQYGA VPPPQYGGAP PQNNNYQQQG SGMQQPQYQN NYPPNRDGSG NPYQG

Arabidopsis Description

MORF8Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LKA5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.