CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05647
EES15089

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15000.1	EES05647	AT3G27960.1	21798944
AT3G15000.1	EES15089	AT5G10270.1	12678503
AT3G15000.1	EES15089	AT5G64960.1	12678503

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92767	Sorghum	mitochondrion	30.37	37.46
Bra021584.1-P	Field mustard	plastid	28.04	36.04
CDY20096	Canola	plastid	26.17	35.67
EES12861	Sorghum	mitochondrion	20.33	35.66
CDX97626	Canola	plastid	29.67	34.89
EER92766	Sorghum	mitochondrion	31.31	34.54
CDX98522	Canola	plastid	29.91	34.5
Os09t0509000-01	Rice	plastid	31.54	34.09
KRH27318	Soybean	nucleus	28.74	33.88
CDX82454	Canola	mitochondrion, plastid	30.14	33.16
EES11377	Sorghum	mitochondrion, plastid	16.59	32.87
PGSC0003DMT400039805	Potato	plastid	30.84	32.75
CDX75801	Canola	mitochondrion, plastid	30.37	32.58
Solyc10g007180.2.1	Tomato	plastid	29.67	32.48
EER87743	Sorghum	mitochondrion	16.82	32.43
AT3G15000.1	Thale cress	plastid	29.91	32.41
Bra027285.1-P	Field mustard	plastid	30.37	32.34
Os09t0132600-01	Rice	mitochondrion	29.91	32.16
EES14516	Sorghum	plastid	16.82	32.0
GSMUA_AchrUn_...	Banana	mitochondrion	30.14	31.93
GSMUA_Achr6P08230_001	Banana	mitochondrion	30.14	31.85
KRH21995	Soybean	plastid	29.44	31.42
Solyc12g014230.1.1	Tomato	nucleus	30.84	30.77
PGSC0003DMT400054809	Potato	mitochondrion	29.44	30.66
VIT_19s0014g01550.t01	Wine grape	plastid	30.14	30.64
Bra001578.1-P	Field mustard	plastid	25.7	29.65
GSMUA_Achr10P...	Banana	mitochondrion	29.44	28.77
CDY32326	Canola	cytosol	20.79	25.21
AT1G53260.1	Thale cress	cytosol	15.42	24.35
EES08356	Sorghum	mitochondrion	17.76	16.96

Protein Annotations

EnsemblPlants:OQU89756	EnsemblPlantsGene:SORBI_3002G259466	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016554	PANTHER:PTHR31346	PANTHER:PTHR31346:SF4	ProteinID:OQU89756	ProteinID:OQU89756.1	SEG:seg
UniParc:UPI0009DC8725	UniProt:A0A1W0W5Y2	MapMan:16.12.5.1	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:64488200..64494934

Molecular Weight (calculated)

47877.6 Da

IEP (calculated)

7.815

GRAVY (calculated)

-0.530

Length

428 amino acids

Sequence
(BLAST)

001: MAAAARFSCK CARSALASPA PVLDLFPRAA FASPASAPPP FSPCCSRAMS RPSPLAPNIF CPRPSVLQPQ SISNQHESTS AAVVKFQARQ GKAGRGRVLA
101: SPLLMDPVQP PVIPLLCLLQ HLHRFQVFKP SDFLRGGQDP LHWAQLKDDG FSGNSPRSIS QVEAGDLSEE KARQKIYSVS TRHYFAFGAL VSKEISYKIE
201: ELPNVRLVLP DSYADVENKD YGGEPFINGE AAPYDPKYHE QLVRNNGPRH SSRNVARREN MQNIHNIDGC DLEHWFVVME PPPGDLDDPD VPREEIIDSY
301: IKVLSKVVGS EEKARQKIYS VSTRHYFAFG ALVSEEISHK IKELPNVRWV LPDSYLDVDN KDYGGEPFIN GQAVPYDPKY HEQWLRNNAC NSGGWHNDGL
401: RSSRKMVRRE VMQNFQNKDA IPGQGYNL

Best Arabidopsis Sequence Match ( AT1G53260.2 )
(BLAST)

001: MKIYSVSHKC YFAFGALVSE DLSHKIKELP KVKWVLPDSY LDGKNKDYGG EPFIDGKAVP YDPKYHEEWI RNNANATNEN RRPRRPRNSD GGRNDRGNQD
101: TGYRRPPPNQ GMGGAPPPPP HIGNNPNMPP HIQPPNMNQN YRGTTTAKHE PELSGTSTAK HEPELSGTST VEHGPELQGT FTAATKHESE LRGTTTTEHE
201: WRMVWKLPAE RWIPTTRSGW WNAATALPTQ

Arabidopsis Description

Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q58G44]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.