Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G394700.1 | Wheat | nucleus | 68.94 | 50.0 |
| TraesCS2B01G412700.1 | Wheat | nucleus | 69.62 | 49.88 |
| TraesCS2D01G392400.1 | Wheat | nucleus | 69.28 | 49.63 |
| CDY67348 | Canola | nucleus | 24.57 | 48.0 |
| Os02t0683500-01 | Rice | nucleus | 62.8 | 44.66 |
| GSMUA_Achr4P26430_001 | Banana | nucleus | 37.88 | 44.4 |
| GSMUA_Achr4P30170_001 | Banana | nucleus | 35.84 | 42.17 |
| Os06t0107800-02 | Rice | nucleus | 28.33 | 41.71 |
| Zm00001d017618_P001 | Maize | nucleus | 59.04 | 41.0 |
| EES07445 | Sorghum | nucleus | 60.41 | 40.78 |
| Os03t0120900-01 | Rice | nucleus | 42.66 | 40.19 |
| CDY43060 | Canola | cytosol | 22.18 | 39.88 |
| Zm00001d051471_P001 | Maize | nucleus | 54.27 | 37.86 |
| Os10t0537100-00 | Rice | nucleus | 39.59 | 37.18 |
| GSMUA_Achr1P03600_001 | Banana | nucleus | 41.64 | 36.97 |
| GSMUA_Achr5P12850_001 | Banana | nucleus | 26.62 | 36.97 |
| Solyc08g013700.1.1 | Tomato | nucleus | 35.84 | 35.71 |
| PGSC0003DMT400015010 | Potato | nucleus | 36.18 | 35.33 |
| CDY69432 | Canola | nucleus | 32.76 | 34.53 |
| PGSC0003DMT400015011 | Potato | nucleus | 36.86 | 34.5 |
| CDY41564 | Canola | nucleus | 34.81 | 34.34 |
| CDY50908 | Canola | nucleus | 36.86 | 34.29 |
| Solyc08g083400.2.1 | Tomato | nucleus | 38.91 | 34.13 |
| CDX67872 | Canola | nucleus | 33.11 | 34.04 |
| CDX80053 | Canola | nucleus | 34.47 | 34.01 |
| Bra004501.1-P | Field mustard | nucleus | 34.47 | 34.01 |
| Bra003482.1-P | Field mustard | nucleus | 33.11 | 33.92 |
| Bra000434.1-P | Field mustard | nucleus | 35.84 | 33.87 |
| Solyc08g013690.1.1 | Tomato | nucleus | 37.2 | 33.64 |
| CDX83351 | Canola | nucleus | 35.15 | 33.44 |
| Bra040478.1-P | Field mustard | nucleus | 33.11 | 33.11 |
| CDY27515 | Canola | nucleus | 34.13 | 32.89 |
| Bra014415.1-P | Field mustard | nucleus | 35.84 | 32.81 |
| CDY58764 | Canola | nucleus | 35.84 | 32.81 |
| GSMUA_Achr4P24970_001 | Banana | nucleus | 26.28 | 32.77 |
| CDY58763 | Canola | nucleus | 35.49 | 32.7 |
| CDY48008 | Canola | nucleus | 33.79 | 32.57 |
| Bra007646.1-P | Field mustard | nucleus | 32.42 | 32.53 |
| CDX76605 | Canola | nucleus | 32.42 | 32.53 |
| CDY11388 | Canola | nucleus | 32.42 | 32.53 |
| AT2G46870.1 | Thale cress | nucleus | 34.13 | 32.26 |
| AT3G61970.1 | Thale cress | nucleus | 32.76 | 32.11 |
| CDY15208 | Canola | nucleus | 35.15 | 31.99 |
| Os11t0156000-01 | Rice | nucleus | 30.03 | 31.54 |
| GSMUA_Achr5P10220_001 | Banana | nucleus | 29.01 | 31.25 |
| GSMUA_Achr2P00400_001 | Banana | nucleus | 30.03 | 30.56 |
| GSMUA_Achr9P18780_001 | Banana | nucleus | 29.69 | 30.42 |
| GSMUA_Achr2P10230_001 | Banana | nucleus | 31.4 | 30.26 |
| CDX90001 | Canola | nucleus | 35.15 | 29.94 |
| KRH68988 | Soybean | nucleus | 42.66 | 29.76 |
| GSMUA_Achr5P20340_001 | Banana | nucleus | 34.13 | 29.67 |
| Bra033294.1-P | Field mustard | nucleus | 34.47 | 29.36 |
| Os08t0157700-00 | Rice | nucleus | 28.33 | 28.92 |
| KRG97268 | Soybean | nucleus | 40.61 | 28.81 |
| PGSC0003DMT400031863 | Potato | nucleus | 39.59 | 28.57 |
| AT1G01030.1 | Thale cress | nucleus | 34.81 | 28.49 |
| Bra030497.1-P | Field mustard | nucleus | 33.79 | 27.97 |
| Os01t0140700-00 | Rice | nucleus | 30.03 | 27.76 |
| Os05t0549800-01 | Rice | nucleus | 32.42 | 27.7 |
| AT4G01500.1 | Thale cress | nucleus | 31.06 | 27.33 |
| KRH47753 | Soybean | nucleus | 45.73 | 26.8 |
| VIT_15s0048g02370.t01 | Wine grape | nucleus | 41.64 | 26.46 |
| CDX97251 | Canola | nucleus | 29.69 | 25.66 |
| Bra008552.1-P | Field mustard | nucleus | 29.35 | 25.44 |
| VIT_02s0025g03000.t01 | Wine grape | nucleus | 39.59 | 25.44 |
| Os01t0141000-01 | Rice | nucleus, plastid | 30.72 | 24.66 |
| Os01t0693400-01 | Rice | nucleus | 32.76 | 24.43 |
| CDY07140 | Canola | nucleus | 25.26 | 24.18 |
| KRH06334 | Soybean | nucleus | 47.78 | 24.05 |
| Bra037417.1-P | Field mustard | nucleus | 25.26 | 23.87 |
| CDY49614 | Canola | nucleus | 25.26 | 23.87 |
| Os02t0764100-01 | Rice | mitochondrion | 18.77 | 21.74 |
| Os02t0455900-00 | Rice | nucleus | 18.43 | 19.85 |
| Os02t0455800-01 | Rice | nucleus | 17.75 | 19.48 |
| Os12t0157000-01 | Rice | cytosol, nucleus | 11.6 | 16.19 |
Protein Annotations
| MapMan:15.5.5.3 | Gene3D:2.40.330.10 | UniProt:A0A0P0WDY0 | InterPro:B3_DNA-bd | ProteinID:BAS90655.1 | InterPro:DNA-bd_pseudobarrel_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003340 | InterPro:IPR015300 | EnsemblPlantsGene:Os04g0581400 |
| EnsemblPlants:Os04t0581400-01 | PFAM:PF02362 | PFscan:PS50863 | PANTHER:PTHR31140 | PANTHER:PTHR31140:SF5 | SMART:SM01019 |
| SUPFAM:SSF101936 | UniParc:UPI00001B0E44 | SEG:seg | : | : | : |
Description
RAV-Like1, RAV-like 1 protein, RAV-LIKE 1B3 DNA binding domain containing protein, Brassinosteroid homeostasis (Os04t0581400-01)
Coordinates
chr4:-:29366459..29367911
Molecular Weight (calculated)
31790.0 Da
IEP (calculated)
10.323
GRAVY (calculated)
-0.683
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQEQDEEEE EAEASPREIP FMTSAAAAAT ASSSSPTSVS PSATASAAAS TSASGSPFRS SDGAGASGSG GGGGGEDVEV IEKEHMFDKV VTPSDVGKLN
101: RLVIPKQHAE KYFPLDSAAN EKGLLLSFED RTGKLWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV SFCRGAAEAT RDRLFIDWKR RADVRDPHRF
201: QRLPLPMTSP YGPWGGGAGA SSCRPRRPPR STSITAFARA STSATSTPLC RRGSSSSSAP QGRGFISTRP CHRRRRHLRL LTNSTLRCTT RAP
101: RLVIPKQHAE KYFPLDSAAN EKGLLLSFED RTGKLWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV SFCRGAAEAT RDRLFIDWKR RADVRDPHRF
201: QRLPLPMTSP YGPWGGGAGA SSCRPRRPPR STSITAFARA STSATSTPLC RRGSSSSSAP QGRGFISTRP CHRRRRHLRL LTNSTLRCTT RAP
001: MMTDLSLTRD EDEEEAKPLA EEEGAREVAD REHMFDKVVT PSDVGKLNRL VIPKQHAERF FPLDSSSNEK GLLLNFEDLT GKSWRFRYSY WNSSQSYVMT
101: KGWSRFVKDK KLDAGDIVSF QRCVGDSGRD SRLFIDWRRR PKVPDHPHFA AGAMFPRFYS FPSTNYSLYN HQQQRHHHSG GGYNYHQIPR EFGYGYFVRS
201: VDQRNNPAAA VADPLVIESV PVMMHGRANQ ELVGTAGKRL RLFGVDMECG ESGMTNSTEE ESSSSGGSLP RGGGGGASSS SFFQLRLGSS SEDDHFTKKG
301: KSSLSFDLDQ
101: KGWSRFVKDK KLDAGDIVSF QRCVGDSGRD SRLFIDWRRR PKVPDHPHFA AGAMFPRFYS FPSTNYSLYN HQQQRHHHSG GGYNYHQIPR EFGYGYFVRS
201: VDQRNNPAAA VADPLVIESV PVMMHGRANQ ELVGTAGKRL RLFGVDMECG ESGMTNSTEE ESSSSGGSLP RGGGGGASSS SFFQLRLGSS SEDDHFTKKG
301: KSSLSFDLDQ
Arabidopsis Description
NGA1B3 domain-containing transcription factor NGA1 [Source:UniProtKB/Swiss-Prot;Acc:O82799]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.