Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G392400.1 | Wheat | nucleus | 97.07 | 97.07 |
| TraesCS2A01G394700.1 | Wheat | nucleus | 95.6 | 96.78 |
| Os04t0581400-01 | Rice | nucleus | 49.88 | 69.62 |
| TraesCS6B01G286900.1 | Wheat | nucleus | 65.53 | 65.53 |
| Zm00001d017618_P001 | Maize | nucleus | 64.55 | 62.56 |
| EES07445 | Sorghum | nucleus | 66.01 | 62.21 |
| Zm00001d051471_P001 | Maize | nucleus | 60.39 | 58.81 |
| GSMUA_Achr4P30170_001 | Banana | nucleus | 32.27 | 53.01 |
| GSMUA_Achr4P26430_001 | Banana | nucleus | 32.27 | 52.8 |
| GSMUA_Achr5P12850_001 | Banana | nucleus | 25.67 | 49.76 |
| TraesCS1B01G215000.1 | Wheat | nucleus | 33.01 | 49.09 |
| CDY67348 | Canola | nucleus | 17.85 | 48.67 |
| TraesCS4B01G348500.1 | Wheat | nucleus | 37.65 | 48.28 |
| GSMUA_Achr4P24970_001 | Banana | nucleus | 27.63 | 48.09 |
| GSMUA_Achr1P03600_001 | Banana | nucleus | 38.63 | 47.88 |
| CDX80053 | Canola | nucleus | 34.23 | 47.14 |
| Bra004501.1-P | Field mustard | nucleus | 34.23 | 47.14 |
| CDY41564 | Canola | nucleus | 33.99 | 46.8 |
| Bra040478.1-P | Field mustard | nucleus | 33.5 | 46.76 |
| CDY48008 | Canola | nucleus | 33.99 | 45.72 |
| CDY50908 | Canola | nucleus | 35.21 | 45.71 |
| TraesCS7B01G362500.1 | Wheat | nucleus | 21.76 | 45.41 |
| CDY27515 | Canola | nucleus | 33.74 | 45.39 |
| Solyc08g013700.1.1 | Tomato | nucleus | 32.27 | 44.9 |
| PGSC0003DMT400015010 | Potato | nucleus | 32.76 | 44.67 |
| Bra000434.1-P | Field mustard | nucleus | 33.74 | 44.52 |
| AT2G46870.1 | Thale cress | nucleus | 33.74 | 44.52 |
| GSMUA_Achr2P10230_001 | Banana | nucleus | 33.01 | 44.41 |
| GSMUA_Achr5P10220_001 | Banana | nucleus | 29.34 | 44.12 |
| CDX83351 | Canola | nucleus | 32.76 | 43.51 |
| PGSC0003DMT400015011 | Potato | nucleus | 33.25 | 43.45 |
| GSMUA_Achr9P18780_001 | Banana | nucleus | 30.32 | 43.36 |
| CDX67872 | Canola | nucleus | 29.83 | 42.81 |
| Bra003482.1-P | Field mustard | nucleus | 29.83 | 42.66 |
| Solyc08g083400.2.1 | Tomato | nucleus | 34.72 | 42.52 |
| GSMUA_Achr2P00400_001 | Banana | nucleus | 29.83 | 42.36 |
| CDY43060 | Canola | cytosol | 16.87 | 42.33 |
| Solyc08g013690.1.1 | Tomato | nucleus | 33.5 | 42.28 |
| CDY69432 | Canola | nucleus | 27.87 | 41.01 |
| AT3G61970.1 | Thale cress | nucleus | 29.58 | 40.47 |
| Bra007646.1-P | Field mustard | nucleus | 28.85 | 40.41 |
| CDX76605 | Canola | nucleus | 28.85 | 40.41 |
| CDY11388 | Canola | nucleus | 28.85 | 40.41 |
| Bra014415.1-P | Field mustard | nucleus | 31.05 | 39.69 |
| CDY58764 | Canola | nucleus | 31.05 | 39.69 |
| CDY58763 | Canola | nucleus | 30.81 | 39.62 |
| TraesCS5B01G126200.1 | Wheat | nucleus | 25.43 | 39.25 |
| CDY15208 | Canola | nucleus | 30.56 | 38.82 |
| CDX90001 | Canola | nucleus | 32.52 | 38.66 |
| TraesCS3B01G065000.1 | Wheat | mitochondrion, nucleus | 20.54 | 38.53 |
| TraesCS2B01G482400.1 | Wheat | nucleus | 24.94 | 38.2 |
| Bra033294.1-P | Field mustard | nucleus | 32.03 | 38.08 |
| GSMUA_Achr5P20340_001 | Banana | nucleus | 30.81 | 37.39 |
| PGSC0003DMT400031863 | Potato | nucleus | 36.67 | 36.95 |
| TraesCS4B01G117100.1 | Wheat | nucleus | 25.18 | 36.92 |
| AT1G01030.1 | Thale cress | nucleus | 32.03 | 36.59 |
| Bra030497.1-P | Field mustard | nucleus | 31.3 | 36.16 |
| KRG97268 | Soybean | nucleus | 36.43 | 36.08 |
| KRH68988 | Soybean | nucleus | 36.92 | 35.95 |
| KRH47753 | Soybean | nucleus | 41.32 | 33.8 |
| VIT_15s0048g02370.t01 | Wine grape | nucleus | 37.16 | 32.97 |
| TraesCS4B01G325600.1 | Wheat | nucleus | 24.45 | 32.47 |
| VIT_02s0025g03000.t01 | Wine grape | nucleus | 35.7 | 32.02 |
| AT4G01500.1 | Thale cress | nucleus | 24.69 | 30.33 |
| TraesCS3B01G293000.1 | Wheat | nucleus | 27.87 | 29.77 |
| KRH06334 | Soybean | nucleus | 42.05 | 29.55 |
| TraesCS4B01G325700.1 | Wheat | plastid | 23.47 | 28.57 |
| CDX97251 | Canola | nucleus | 23.47 | 28.32 |
| TraesCS1B01G392300.1 | Wheat | nucleus | 26.89 | 28.13 |
| Bra008552.1-P | Field mustard | nucleus | 23.23 | 28.11 |
| TraesCS3B01G065100.1 | Wheat | nucleus | 23.72 | 27.71 |
| TraesCS1B01G392000.1 | Wheat | nucleus | 27.63 | 27.49 |
| CDY07140 | Canola | nucleus | 20.54 | 27.45 |
| TraesCS3B01G064900.1 | Wheat | nucleus | 23.72 | 27.25 |
| Bra037417.1-P | Field mustard | nucleus | 20.54 | 27.1 |
| CDY49614 | Canola | nucleus | 20.54 | 27.1 |
| TraesCS1B01G392200.1 | Wheat | nucleus, plastid | 26.16 | 25.72 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G412700.1 | EnsemblPlantsGene:TraesCS2B01G412700 | Gene3D:2.40.330.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | InterPro:IPR003340 | InterPro:IPR015300 | PANTHER:PTHR31140 |
| PANTHER:PTHR31140:SF5 | PFAM:PF02362 | PFscan:PS50863 | SEG:seg | SMART:SM01019 | SUPFAM:SSF101936 |
| TIGR:cd10017 | MapMan:15.5.5.3 | : | : | : | : |
Description
No Description!
Coordinates
chr2B:+:588066995..588068581
Molecular Weight (calculated)
43702.9 Da
IEP (calculated)
6.445
GRAVY (calculated)
-0.515
Length
409 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFTAASSSS RLSKEGEEEE EMEEEEEEGD EASPREIPFM TAMTAAASSS SPTSAASPSS AAASACASGS GSPFRSSDGA GASGSGAGGG AGGGDVEVID
101: KEHMFDKVVT PSDVGKLNRL VIPKQHAEKY FPLDAAANEK GLLLSFEDRG GKLWRFRYSY WNSSQSYVMT KGWSRFVKEK RLDAGDTVSF CRGAAEATRD
201: RLFIDWKRRA ELRDPHRLAR LPMPMPTSSP YGPWGAGPGG FFMPPAPPAT LYEHHRLRQS FDFRSISPAA PQRPQVLYFG SAGIFPHATM PPPQPQPPLH
301: IAVQPSPAVT VGMPMVLDST PLVNSPTAAA KRVRLFGVNL DNPHTHGGES SNDANALSLR MPGWQRPTPF RSLELPQHGA AGAESSAASS PSSSSSSKRE
401: AHSSLDLDL
101: KEHMFDKVVT PSDVGKLNRL VIPKQHAEKY FPLDAAANEK GLLLSFEDRG GKLWRFRYSY WNSSQSYVMT KGWSRFVKEK RLDAGDTVSF CRGAAEATRD
201: RLFIDWKRRA ELRDPHRLAR LPMPMPTSSP YGPWGAGPGG FFMPPAPPAT LYEHHRLRQS FDFRSISPAA PQRPQVLYFG SAGIFPHATM PPPQPQPPLH
301: IAVQPSPAVT VGMPMVLDST PLVNSPTAAA KRVRLFGVNL DNPHTHGGES SNDANALSLR MPGWQRPTPF RSLELPQHGA AGAESSAASS PSSSSSSKRE
401: AHSSLDLDL
001: MMTDLSLTRD EDEEEAKPLA EEEGAREVAD REHMFDKVVT PSDVGKLNRL VIPKQHAERF FPLDSSSNEK GLLLNFEDLT GKSWRFRYSY WNSSQSYVMT
101: KGWSRFVKDK KLDAGDIVSF QRCVGDSGRD SRLFIDWRRR PKVPDHPHFA AGAMFPRFYS FPSTNYSLYN HQQQRHHHSG GGYNYHQIPR EFGYGYFVRS
201: VDQRNNPAAA VADPLVIESV PVMMHGRANQ ELVGTAGKRL RLFGVDMECG ESGMTNSTEE ESSSSGGSLP RGGGGGASSS SFFQLRLGSS SEDDHFTKKG
301: KSSLSFDLDQ
101: KGWSRFVKDK KLDAGDIVSF QRCVGDSGRD SRLFIDWRRR PKVPDHPHFA AGAMFPRFYS FPSTNYSLYN HQQQRHHHSG GGYNYHQIPR EFGYGYFVRS
201: VDQRNNPAAA VADPLVIESV PVMMHGRANQ ELVGTAGKRL RLFGVDMECG ESGMTNSTEE ESSSSGGSLP RGGGGGASSS SFFQLRLGSS SEDDHFTKKG
301: KSSLSFDLDQ
Arabidopsis Description
NGA1B3 domain-containing transcription factor NGA1 [Source:UniProtKB/Swiss-Prot;Acc:O82799]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.