Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P12850_001 | Banana | nucleus | 43.06 | 58.77 |
| GSMUA_Achr4P24970_001 | Banana | nucleus | 42.01 | 51.49 |
| GSMUA_Achr5P10220_001 | Banana | nucleus | 47.22 | 50.0 |
| GSMUA_Achr9P18780_001 | Banana | nucleus | 49.65 | 50.0 |
| GSMUA_Achr2P10230_001 | Banana | nucleus | 51.74 | 49.01 |
| GSMUA_Achr4P30170_001 | Banana | nucleus | 39.58 | 45.78 |
| GSMUA_Achr4P26430_001 | Banana | nucleus | 39.58 | 45.6 |
| GSMUA_Achr7P04630_001 | Banana | nucleus | 28.47 | 39.81 |
| GSMUA_Achr1P03600_001 | Banana | nucleus | 44.44 | 38.79 |
| GSMUA_Achr9P08980_001 | Banana | nucleus | 21.18 | 37.65 |
| GSMUA_Achr4P12210_001 | Banana | nucleus | 29.17 | 37.5 |
| CDY67348 | Canola | nucleus | 19.44 | 37.33 |
| EER92015 | Sorghum | nucleus | 35.07 | 36.86 |
| Zm00001d029749_P001 | Maize | nucleus | 34.72 | 36.63 |
| GSMUA_AchrUn_... | Banana | cytosol | 30.56 | 36.51 |
| Zm00001d010077_P001 | Maize | nucleus | 32.64 | 36.29 |
| TraesCS5A01G516600.1 | Wheat | nucleus | 39.93 | 36.28 |
| Zm00001d047359_P001 | Maize | nucleus | 34.72 | 36.1 |
| Os03t0120900-01 | Rice | nucleus | 38.89 | 36.01 |
| TraesCS4B01G348500.1 | Wheat | nucleus | 39.24 | 35.42 |
| Zm00001d048815_P001 | Maize | nucleus | 28.47 | 35.34 |
| TraesCS1A01G200500.1 | Wheat | nucleus | 33.33 | 34.53 |
| Os10t0537100-00 | Rice | nucleus | 36.81 | 33.97 |
| Bra040478.1-P | Field mustard | nucleus | 34.38 | 33.79 |
| GSMUA_Achr11P... | Banana | nucleus | 21.53 | 33.51 |
| TraesCS1B01G215000.1 | Wheat | nucleus | 31.94 | 33.45 |
| GSMUA_Achr3P19210_001 | Banana | nucleus | 23.26 | 33.33 |
| OQU93364 | Sorghum | nucleus | 38.19 | 33.33 |
| CDY27515 | Canola | nucleus | 35.07 | 33.22 |
| HORVU4Hr1G084950.3 | Barley | nucleus | 39.24 | 33.14 |
| CDY43060 | Canola | cytosol | 18.75 | 33.13 |
| TraesCS1D01G203900.1 | Wheat | nucleus | 33.33 | 32.99 |
| CDY48008 | Canola | nucleus | 34.72 | 32.89 |
| Zm00001d027409_P001 | Maize | nucleus | 37.15 | 32.72 |
| Bra004501.1-P | Field mustard | nucleus | 33.68 | 32.66 |
| CDX80053 | Canola | nucleus | 33.68 | 32.66 |
| HORVU1Hr1G051780.2 | Barley | nucleus | 32.99 | 32.42 |
| CDY41564 | Canola | nucleus | 33.33 | 32.32 |
| Zm00001d035982_P001 | Maize | nucleus | 9.72 | 31.82 |
| PGSC0003DMT400015010 | Potato | nucleus | 32.99 | 31.67 |
| HORVU7Hr1G046950.1 | Barley | nucleus | 29.86 | 31.39 |
| Solyc08g013700.1.1 | Tomato | nucleus | 31.94 | 31.29 |
| AT2G46870.1 | Thale cress | nucleus | 33.33 | 30.97 |
| CDX83351 | Canola | nucleus | 32.99 | 30.84 |
| CDY50908 | Canola | nucleus | 33.68 | 30.79 |
| Bra000434.1-P | Field mustard | nucleus | 32.99 | 30.65 |
| GSMUA_Achr9P02600_001 | Banana | nucleus | 20.49 | 30.57 |
| PGSC0003DMT400015011 | Potato | nucleus | 32.99 | 30.35 |
| Solyc08g013690.1.1 | Tomato | nucleus | 34.03 | 30.25 |
| TraesCS2A01G394700.1 | Wheat | nucleus | 42.36 | 30.2 |
| TraesCS2D01G392400.1 | Wheat | nucleus | 42.71 | 30.07 |
| Os04t0581400-01 | Rice | nucleus | 30.56 | 30.03 |
| TraesCS2B01G412700.1 | Wheat | nucleus | 42.36 | 29.83 |
| EES12712 | Sorghum | nucleus | 43.06 | 29.52 |
| CDY15208 | Canola | nucleus | 32.99 | 29.5 |
| Zm00001d002562_P001 | Maize | nucleus | 41.32 | 29.1 |
| CDX90001 | Canola | nucleus | 34.72 | 29.07 |
| GSMUA_Achr6P35600_001 | Banana | nucleus | 24.31 | 28.93 |
| Os02t0683500-01 | Rice | nucleus | 41.32 | 28.88 |
| TraesCS6B01G286900.1 | Wheat | nucleus | 40.97 | 28.85 |
| TraesCS6A01G259600.1 | Wheat | nucleus | 41.32 | 28.74 |
| Solyc08g083400.2.1 | Tomato | nucleus | 33.33 | 28.74 |
| HORVU6Hr1G066190.2 | Barley | nucleus | 40.62 | 28.61 |
| TraesCS6D01G240600.1 | Wheat | nucleus | 40.97 | 28.5 |
| Bra033294.1-P | Field mustard | nucleus | 34.03 | 28.49 |
| AT3G61970.1 | Thale cress | nucleus | 29.51 | 28.43 |
| Bra007646.1-P | Field mustard | nucleus | 28.82 | 28.42 |
| CDX76605 | Canola | nucleus | 28.82 | 28.42 |
| CDY11388 | Canola | nucleus | 28.82 | 28.42 |
| CDX67872 | Canola | nucleus | 27.78 | 28.07 |
| CDY69432 | Canola | nucleus | 27.08 | 28.06 |
| Bra003482.1-P | Field mustard | nucleus | 27.78 | 27.97 |
| Zm00001d026005_P001 | Maize | nucleus | 38.89 | 27.72 |
| Bra030497.1-P | Field mustard | nucleus | 34.03 | 27.68 |
| AT1G01030.1 | Thale cress | nucleus | 34.38 | 27.65 |
| GSMUA_Achr6P13140_001 | Banana | nucleus | 23.61 | 27.53 |
| PGSC0003DMT400031863 | Potato | nucleus | 38.54 | 27.34 |
| CDY58763 | Canola | nucleus | 29.86 | 27.04 |
| GSMUA_Achr5P20340_001 | Banana | nucleus | 31.6 | 27.0 |
| VIT_02s0025g03000.t01 | Wine grape | nucleus | 42.71 | 26.97 |
| Bra014415.1-P | Field mustard | nucleus | 29.86 | 26.88 |
| CDY58764 | Canola | nucleus | 29.86 | 26.88 |
| Zm00001d051471_P001 | Maize | nucleus | 38.19 | 26.19 |
| Zm00001d017618_P001 | Maize | nucleus | 38.19 | 26.07 |
| KRH68988 | Soybean | nucleus | 37.15 | 25.48 |
| EES07445 | Sorghum | nucleus | 38.19 | 25.35 |
| VIT_15s0048g02370.t01 | Wine grape | nucleus | 39.93 | 24.95 |
| GSMUA_Achr1P21250_001 | Banana | nucleus | 25.35 | 24.83 |
| KRG97268 | Soybean | nucleus | 35.42 | 24.7 |
| GSMUA_Achr6P18320_001 | Banana | nucleus | 28.82 | 24.41 |
| GSMUA_Achr5P09950_001 | Banana | nucleus | 27.08 | 24.22 |
| GSMUA_Achr6P01420_001 | Banana | nucleus | 26.39 | 24.05 |
| GSMUA_Achr1P05400_001 | Banana | nucleus | 24.31 | 23.49 |
| GSMUA_Achr6P09880_001 | Banana | nucleus | 22.92 | 22.84 |
| KRH47753 | Soybean | nucleus | 39.24 | 22.6 |
| AT4G01500.1 | Thale cress | nucleus | 24.65 | 21.32 |
| KRH06334 | Soybean | nucleus | 42.01 | 20.79 |
| GSMUA_Achr2P22560_001 | Banana | nucleus | 22.22 | 20.65 |
| GSMUA_Achr3P29380_001 | Banana | nucleus | 18.4 | 20.15 |
| Bra037417.1-P | Field mustard | nucleus | 21.53 | 20.0 |
| CDY49614 | Canola | nucleus | 21.53 | 20.0 |
| CDY07140 | Canola | nucleus | 21.18 | 19.93 |
| Bra008552.1-P | Field mustard | nucleus | 23.26 | 19.82 |
| GSMUA_AchrUn_... | Banana | nucleus | 25.69 | 19.79 |
| CDX97251 | Canola | nucleus | 23.26 | 19.76 |
| GSMUA_Achr4P06710_001 | Banana | nucleus | 20.83 | 17.14 |
| GSMUA_Achr3P21100_001 | Banana | nucleus | 24.31 | 16.99 |
| GSMUA_Achr10P... | Banana | nucleus | 15.97 | 15.75 |
| GSMUA_Achr4P03670_001 | Banana | nucleus | 15.97 | 15.65 |
| GSMUA_Achr11P... | Banana | nucleus | 17.01 | 14.58 |
| GSMUA_Achr9P21470_001 | Banana | nucleus | 15.62 | 14.52 |
| GSMUA_Achr8P14650_001 | Banana | nucleus | 19.44 | 13.53 |
Protein Annotations
| Gene3D:2.40.330.10 | MapMan:35.1 | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr2G00400_001 | EnsemblPlants:GSMUA_Achr2P00400_001 | EnsemblPlants:GSMUA_Achr2T00400_001 | InterPro:IPR003340 | InterPro:IPR015300 |
| UniProt:M0S3Y1 | PFAM:PF02362 | PANTHER:PTHR31140 | PANTHER:PTHR31140:SF4 | SMART:SM01019 | SUPFAM:SSF101936 |
| UniParc:UPI0002949EF9 | SEG:seg | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G00400_001]
Coordinates
chr2:+:3068241..3069212
Molecular Weight (calculated)
31213.1 Da
IEP (calculated)
7.903
GRAVY (calculated)
-0.360
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MELTRRKHWK HAPFAPSSSS LSQSSSSAPF RWSDGSSGSG DDDLVEKEHM FDKVVTPSDV GKLNRLVIPK QHAESQSFVM TKGWSRFVKE KRLAAGDTVS
101: FGRGVGESGR DRLYIDWKRR PERLDPIPVP RIPLPGVTFA RSVGPTGGHL YMLPATTTVY GHHGQGYGYN IASMTALEGQ FLYFPPPVTG RPPIEVQPGG
201: GGGLSMVLDP VPVAHSHATA RHVRLFGVNL VCPDAEDDGG VRGVTSSILL QSQQDSALPL LSLPLQQDTL VPSSSMIKEQ HSPSDLDL
101: FGRGVGESGR DRLYIDWKRR PERLDPIPVP RIPLPGVTFA RSVGPTGGHL YMLPATTTVY GHHGQGYGYN IASMTALEGQ FLYFPPPVTG RPPIEVQPGG
201: GGGLSMVLDP VPVAHSHATA RHVRLFGVNL VCPDAEDDGG VRGVTSSILL QSQQDSALPL LSLPLQQDTL VPSSSMIKEQ HSPSDLDL
001: MMTDLSLTRD EDEEEAKPLA EEEGAREVAD REHMFDKVVT PSDVGKLNRL VIPKQHAERF FPLDSSSNEK GLLLNFEDLT GKSWRFRYSY WNSSQSYVMT
101: KGWSRFVKDK KLDAGDIVSF QRCVGDSGRD SRLFIDWRRR PKVPDHPHFA AGAMFPRFYS FPSTNYSLYN HQQQRHHHSG GGYNYHQIPR EFGYGYFVRS
201: VDQRNNPAAA VADPLVIESV PVMMHGRANQ ELVGTAGKRL RLFGVDMECG ESGMTNSTEE ESSSSGGSLP RGGGGGASSS SFFQLRLGSS SEDDHFTKKG
301: KSSLSFDLDQ
101: KGWSRFVKDK KLDAGDIVSF QRCVGDSGRD SRLFIDWRRR PKVPDHPHFA AGAMFPRFYS FPSTNYSLYN HQQQRHHHSG GGYNYHQIPR EFGYGYFVRS
201: VDQRNNPAAA VADPLVIESV PVMMHGRANQ ELVGTAGKRL RLFGVDMECG ESGMTNSTEE ESSSSGGSLP RGGGGGASSS SFFQLRLGSS SEDDHFTKKG
301: KSSLSFDLDQ
Arabidopsis Description
NGA1B3 domain-containing transcription factor NGA1 [Source:UniProtKB/Swiss-Prot;Acc:O82799]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.