Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G259600.1 | Wheat | nucleus | 97.83 | 97.83 |
| TraesCS6B01G286900.1 | Wheat | nucleus | 96.62 | 97.8 |
| HORVU6Hr1G066190.2 | Barley | nucleus | 94.69 | 95.84 |
| Os02t0683500-01 | Rice | nucleus | 78.26 | 78.64 |
| TraesCS2D01G392400.1 | Wheat | nucleus | 65.7 | 66.5 |
| GSMUA_Achr4P30170_001 | Banana | nucleus | 32.37 | 53.82 |
| GSMUA_Achr4P26430_001 | Banana | nucleus | 31.64 | 52.4 |
| GSMUA_Achr5P12850_001 | Banana | nucleus | 25.6 | 50.24 |
| GSMUA_Achr1P03600_001 | Banana | nucleus | 39.37 | 49.39 |
| TraesCS1D01G203900.1 | Wheat | nucleus | 34.54 | 49.14 |
| TraesCS7D01G448900.1 | Wheat | nucleus | 22.71 | 47.96 |
| CDY67348 | Canola | nucleus | 17.15 | 47.33 |
| CDX80053 | Canola | nucleus | 33.33 | 46.46 |
| Bra004501.1-P | Field mustard | nucleus | 33.33 | 46.46 |
| Solyc08g013700.1.1 | Tomato | nucleus | 32.61 | 45.92 |
| CDY41564 | Canola | nucleus | 32.85 | 45.79 |
| GSMUA_Achr4P24970_001 | Banana | nucleus | 25.85 | 45.53 |
| Bra040478.1-P | Field mustard | nucleus | 32.13 | 45.39 |
| GSMUA_Achr5P10220_001 | Banana | nucleus | 29.71 | 45.22 |
| Solyc08g013690.1.1 | Tomato | nucleus | 35.27 | 45.06 |
| PGSC0003DMT400015011 | Potato | nucleus | 33.82 | 44.73 |
| TraesCS7D01G017000.1 | Wheat | nucleus | 23.43 | 44.7 |
| CDY48008 | Canola | nucleus | 32.61 | 44.41 |
| PGSC0003DMT400015010 | Potato | nucleus | 32.13 | 44.33 |
| CDY27515 | Canola | nucleus | 32.13 | 43.75 |
| CDY50908 | Canola | nucleus | 32.85 | 43.17 |
| CDY69432 | Canola | nucleus | 28.74 | 42.81 |
| GSMUA_Achr2P10230_001 | Banana | nucleus | 31.4 | 42.76 |
| Bra003482.1-P | Field mustard | nucleus | 29.47 | 42.66 |
| Solyc08g083400.2.1 | Tomato | nucleus | 34.3 | 42.52 |
| CDX67872 | Canola | nucleus | 29.23 | 42.46 |
| Bra000434.1-P | Field mustard | nucleus | 31.64 | 42.26 |
| CDX83351 | Canola | nucleus | 31.16 | 41.88 |
| CDY43060 | Canola | cytosol | 16.43 | 41.72 |
| AT2G46870.1 | Thale cress | nucleus | 31.16 | 41.61 |
| GSMUA_Achr9P18780_001 | Banana | nucleus | 28.74 | 41.61 |
| GSMUA_Achr2P00400_001 | Banana | nucleus | 28.5 | 40.97 |
| AT3G61970.1 | Thale cress | nucleus | 29.23 | 40.47 |
| Bra007646.1-P | Field mustard | nucleus | 28.5 | 40.41 |
| CDY11388 | Canola | nucleus | 28.5 | 40.41 |
| CDX76605 | Canola | nucleus | 28.5 | 40.41 |
| CDY58763 | Canola | nucleus | 30.92 | 40.25 |
| CDY58764 | Canola | nucleus | 30.92 | 40.0 |
| Bra014415.1-P | Field mustard | nucleus | 30.92 | 40.0 |
| KRH68988 | Soybean | nucleus | 38.65 | 38.1 |
| KRG97268 | Soybean | nucleus | 37.92 | 38.01 |
| CDX90001 | Canola | nucleus | 31.4 | 37.79 |
| TraesCS5D01G134700.1 | Wheat | nucleus | 24.15 | 37.59 |
| CDY15208 | Canola | nucleus | 29.23 | 37.58 |
| PGSC0003DMT400031863 | Potato | nucleus | 36.72 | 37.44 |
| Bra033294.1-P | Field mustard | nucleus | 30.92 | 37.21 |
| TraesCS2D01G460900.1 | Wheat | nucleus | 23.67 | 36.7 |
| AT1G01030.1 | Thale cress | nucleus | 31.16 | 36.03 |
| KRH47753 | Soybean | nucleus | 43.0 | 35.6 |
| Bra030497.1-P | Field mustard | nucleus | 30.43 | 35.59 |
| TraesCS4D01G114900.1 | Wheat | nucleus | 24.15 | 35.46 |
| GSMUA_Achr5P20340_001 | Banana | nucleus | 28.74 | 35.31 |
| VIT_02s0025g03000.t01 | Wine grape | nucleus | 36.47 | 33.11 |
| VIT_15s0048g02370.t01 | Wine grape | nucleus | 36.72 | 32.97 |
| KRH06334 | Soybean | nucleus | 43.96 | 31.27 |
| TraesCS4D01G322500.1 | Wheat | nucleus | 22.71 | 30.82 |
| TraesCS3D01G260100.1 | Wheat | nucleus | 27.78 | 30.75 |
| AT4G01500.1 | Thale cress | nucleus | 23.91 | 29.73 |
| TraesCS1D01G378900.1 | Wheat | nucleus | 27.05 | 28.57 |
| CDX97251 | Canola | nucleus | 23.19 | 28.32 |
| Bra008552.1-P | Field mustard | nucleus | 22.95 | 28.11 |
| TraesCS3D01G052300.1 | Wheat | nucleus | 23.67 | 27.53 |
| TraesCS3D01G052400.1 | Wheat | nucleus | 23.19 | 27.2 |
| TraesCS1D01G378500.1 | Wheat | nucleus | 27.05 | 26.73 |
| TraesCS1D01G378400.1 | Wheat | nucleus | 26.57 | 26.7 |
| CDY07140 | Canola | nucleus | 19.32 | 26.14 |
| TraesCS1D01G378800.1 | Wheat | nucleus | 26.09 | 26.02 |
| TraesCS4D01G322600.1 | Wheat | nucleus | 22.71 | 25.97 |
| CDY49614 | Canola | nucleus | 19.32 | 25.81 |
| Bra037417.1-P | Field mustard | nucleus | 19.32 | 25.81 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G240600.1 | EnsemblPlantsGene:TraesCS6D01G240600 | Gene3D:2.40.330.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | InterPro:IPR003340 | InterPro:IPR015300 | PANTHER:PTHR31140 |
| PANTHER:PTHR31140:SF39 | PFAM:PF02362 | PFscan:PS50863 | SEG:seg | SMART:SM01019 | SUPFAM:SSF101936 |
| TIGR:cd10017 | MapMan:15.5.5.3 | : | : | : | : |
Description
No Description!
Coordinates
chr6D:-:342472000..342473244
Molecular Weight (calculated)
44300.8 Da
IEP (calculated)
9.149
GRAVY (calculated)
-0.505
Length
414 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFTATSSRF SKGEEEVEEE QEEASMPREI PFMTAAAASS AAAPSASASA STPASASASA SPSGSSPHFR SGDDAGASGS GGGGGSVAEA VEKEHMFDKV
101: VTPSDVGKLN RLVIPKQYAE KYFPLDSAAN EKGLLLNFED SAGKPWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV SFSRGAGEAA RHRLFIDWKR
201: RADTRDPLRL PRLPLQMPLT SHYSPWGLGA GGRGFFMPPS PPATLYEHRL RQGFDFRGMN PSYPTMGRQV ILFGSAARMP PHTPAPLLVP RPPPPLHFTV
301: QQQGSGAGVS VTAGSPVVLD SVPVIESPTT ATKKRVRLFG VNLDNPQHPG DGGGESSNYG SALPLQMPAS AWRPRDHTLR LLEFPSHGAG AEASSPSSSS
401: SSKREAHSGL DLDL
101: VTPSDVGKLN RLVIPKQYAE KYFPLDSAAN EKGLLLNFED SAGKPWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV SFSRGAGEAA RHRLFIDWKR
201: RADTRDPLRL PRLPLQMPLT SHYSPWGLGA GGRGFFMPPS PPATLYEHRL RQGFDFRGMN PSYPTMGRQV ILFGSAARMP PHTPAPLLVP RPPPPLHFTV
301: QQQGSGAGVS VTAGSPVVLD SVPVIESPTT ATKKRVRLFG VNLDNPQHPG DGGGESSNYG SALPLQMPAS AWRPRDHTLR LLEFPSHGAG AEASSPSSSS
401: SSKREAHSGL DLDL
001: MNQEDKEKPI EEASSSMERE HMFDKVVTPS DVGKLNRLVI PKQHAERYFP LDNSTTNDSN KGLLLNFEDR SGNSWRFRYS YWNSSQSYVM TKGWSRFVKD
101: KKLDAGDIVS FQRDSCNKDK LYIDWRRRPK IPDHHHQQFA GAMFPRFYTF PHPQMPTNYE THNLYHRFHQ RDLGIGYYVR SMERSHPTAV IESVPVMMQR
201: RAQVASMASR GEKRLRLFGV DMECGGGGGS VNSTEEESSS SGGSIPRGRV SMVGAGSLLQ LRLVSSDDES LVAMEAASLE DHHFFTKKGK PSLSFDLDR
101: KKLDAGDIVS FQRDSCNKDK LYIDWRRRPK IPDHHHQQFA GAMFPRFYTF PHPQMPTNYE THNLYHRFHQ RDLGIGYYVR SMERSHPTAV IESVPVMMQR
201: RAQVASMASR GEKRLRLFGV DMECGGGGGS VNSTEEESSS SGGSIPRGRV SMVGAGSLLQ LRLVSSDDES LVAMEAASLE DHHFFTKKGK PSLSFDLDR
Arabidopsis Description
NGA2NGA2 [Source:UniProtKB/TrEMBL;Acc:A0A178V7R1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.