Factsheet for TraesCS4D01G322500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G325600.1	Wheat	nucleus	95.41	94.48
TraesCSU01G179500.1	Wheat	nucleus	84.92	80.94
TraesCS3A01G053900.1	Wheat	nucleus	84.26	80.31
HORVU4Hr1G082090.2	Barley	mitochondrion	90.49	80.23
TraesCS3D01G052300.1	Wheat	nucleus	63.61	54.49
TraesCS3D01G052400.1	Wheat	nucleus	62.95	54.39
TraesCS4D01G322600.1	Wheat	nucleus	60.0	50.55
OQU77426	Sorghum	nucleus	25.25	47.83
TraesCS3D01G260100.1	Wheat	nucleus	56.39	45.99
TraesCS1D01G378900.1	Wheat	nucleus	53.77	41.84
TraesCS7D01G448900.1	Wheat	nucleus	25.57	39.8
TraesCS1D01G378400.1	Wheat	nucleus	52.79	39.08
TraesCS1D01G378500.1	Wheat	nucleus	53.11	38.66
TraesCS1D01G378800.1	Wheat	nucleus	52.13	38.31
TraesCS7D01G017000.1	Wheat	nucleus	25.9	36.41
TraesCS5D01G134700.1	Wheat	nucleus	26.89	30.83
TraesCS2D01G460900.1	Wheat	nucleus	26.56	30.34
TraesCS1D01G203900.1	Wheat	nucleus	27.21	28.52
TraesCS4D01G114900.1	Wheat	nucleus	26.23	28.37
Os02t0764100-01	Rice	mitochondrion	21.97	26.48
TraesCS2D01G392400.1	Wheat	nucleus	32.79	24.45
TraesCS6D01G240600.1	Wheat	nucleus	30.82	22.71

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR003340	InterPro:IPR015300	InterPro:IPR036955
PFAM:PF00847	PFAM:PF02362	PFscan:PS50863	PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF9
SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS4D01G322500	EnsemblPlants:TraesCS4D01G322500.1
TIGR:cd00018	TIGR:cd10017	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4D:-:484494175..484495092

Molecular Weight (calculated)

33100.3 Da

IEP (calculated)

7.296

GRAVY (calculated)

-0.647

Length

305 amino acids

Sequence
(BLAST)

001: MASSKPTNPE IDNDMECSSP ESGAEDAVES SSPAPAPSSR FKGVVPQPNG RWGAQIYEKH SRVWLGTFAD EEAAARAYDV AALRFRGRDA VTNHQLPLAA
101: EGGSSSSTSE LAFLADHSKA EIVDMLRKHT YAEELRQGLR RGHGRAQPTP AWAREFPFEK AVTPSDVGKL NRLVVPKQHA EKHFPPTTAA ATGSNGKGLL
201: LNFEDGQGKV WRFRYSYWNS SQSYVLTKGW SRFVREKGLR AGDTVTFSRS AYVMNDTDEQ LFIDYKQSNK NEEAADAAKN ESGHAAVKLF GVDIGGGGMA
301: GSSGG

Best Arabidopsis Sequence Match ( AT1G13260.1 )
(BLAST)

001: MESSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS

Arabidopsis Description

RAV1AP2/ERF and B3 domain-containing transcription factor RAV1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.