Factsheet for TraesCS1D01G378400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G392200.1	Wheat	nucleus, plastid	92.72	91.83
TraesCS1D01G378800.1	Wheat	nucleus	92.48	91.81
TraesCS1D01G378900.1	Wheat	nucleus	83.25	87.5
TraesCS1D01G378500.1	Wheat	nucleus	86.65	85.2
HORVU1Hr1G082670.6	Barley	nucleus	79.85	83.72
KXG22484	Sorghum	nucleus, plastid	69.9	70.59
Os05t0549800-01	Rice	nucleus	57.52	69.1
Zm00001d009468_P001	Maize	nucleus, plastid	62.86	69.07
TraesCS3D01G260100.1	Wheat	nucleus	62.14	68.45
GSMUA_Achr1P21250_001	Banana	nucleus	42.23	59.18
CDX97996	Canola	nucleus	44.42	56.31
CDY72302	Canola	nucleus	44.42	56.13
CDY40973	Canola	nucleus	42.72	55.87
CDY58354	Canola	nucleus	44.17	55.83
CDY61361	Canola	nucleus	44.17	55.66
KRH34761	Soybean	nucleus	47.09	55.27
HORVU4Hr1G074300.4	Barley	nucleus	19.9	54.67
AT1G68840.1	Thale cress	nucleus	46.36	54.26
CDY24391	Canola	nucleus	44.42	54.14
CDX84999	Canola	nucleus	46.36	53.95
CDX81561	Canola	nucleus	44.9	53.94
KRG92025	Soybean	nucleus	47.33	53.87
Bra026917.1-P	Field mustard	nucleus	44.42	53.82
AT1G13260.1	Thale cress	nucleus	44.9	53.78
CDY36099	Canola	nucleus	45.63	53.71
Bra019821.1-P	Field mustard	nucleus	44.42	53.67
Bra038346.1-P	Field mustard	nucleus, plastid	45.15	53.14
CDY45849	Canola	nucleus, plastid	45.15	53.14
CDY16133	Canola	nucleus	46.12	53.07
AT3G25730.1	Thale cress	nucleus	42.72	52.85
TraesCS4D01G322500.1	Wheat	nucleus	39.08	52.79
Bra026509.1-P	Field mustard	nucleus	41.75	52.76
GSMUA_Achr6P01420_001	Banana	nucleus	40.29	52.53
Bra011002.1-P	Field mustard	nucleus	45.63	52.37
CDX99755	Canola	nucleus	42.96	52.06
AT1G25560.1	Thale cress	nucleus	45.15	51.52
VIT_01s0011g03070.t01	Wine grape	nucleus	47.09	51.32
Bra024735.1-P	Field mustard	nucleus	45.87	50.81
KRH75484	Soybean	nucleus	47.33	50.78
KRH70603	Soybean	nucleus	48.79	50.12
CDX83547	Canola	nucleus	39.32	50.0
TraesCS3D01G052300.1	Wheat	nucleus	42.96	49.72
TraesCS3D01G052400.1	Wheat	nucleus	42.23	49.29
Solyc05g009790.1.1	Tomato	nucleus	47.09	49.11
PGSC0003DMT400002125	Potato	nucleus	46.84	48.49
TraesCS4D01G322600.1	Wheat	nucleus	40.78	46.41
TraesCS7D01G448900.1	Wheat	nucleus	19.42	40.82
TraesCS7D01G017000.1	Wheat	nucleus	20.39	38.71
TraesCS5D01G134700.1	Wheat	nucleus	23.3	36.09
TraesCS2D01G460900.1	Wheat	nucleus	22.57	34.83
TraesCS4D01G114900.1	Wheat	nucleus	23.06	33.69
TraesCS1D01G203900.1	Wheat	nucleus	22.57	31.96
TraesCS2D01G392400.1	Wheat	nucleus	26.7	26.89
TraesCS6D01G240600.1	Wheat	nucleus	26.7	26.57

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR003340	InterPro:IPR015300	InterPro:IPR036955
PFAM:PF00847	PFAM:PF02362	PFscan:PS50863	PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF21
SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS1D01G378400	EnsemblPlants:TraesCS1D01G378400.1
TIGR:cd00018	TIGR:cd10017	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1D:-:454457183..454458421

Molecular Weight (calculated)

44095.0 Da

IEP (calculated)

10.239

GRAVY (calculated)

-0.393

Length

412 amino acids

Sequence
(BLAST)

001: MDSARSCLVD DVSSGASTGK KASPAPAVPA TKPLQRVGSG ASAVMDAPEP GAEADSGRVG RLPSSKYKGV VPQPNGRWGA QIYERHQRVW LGTFTGEAEA
101: ARAYDAAAQR FRGRDAVTNF RPLAESDPGD AAELRFLAAR SKAEVVDMLR KHIYPAELAQ HKRAFLASAA SSPTSSSSTP ASSAPSAAAG REHLFDKTVT
201: PSDVGKLNRL VIPKQHAEKH FPLQLPSASA AVPGECKGVL LNFDDAVGKM WRFRYSYWNS SQTYVLTKGW SRFVKEKGLH AGDVVGFYRS ASGNNQLFID
301: CKLRSKTTTT TTTTTSLNAA AAPSPAPVTR TVRLFGVDLL TAPAPEQEEY GMAKTNKRSM DASVAAPTPA HAVWKKRCVD FALTYRHATT SQCPRPRDQL
401: KGVQAAGCAF AL

Best Arabidopsis Sequence Match ( AT1G68840.2 )
(BLAST)

001: MDSSCIDEIS SSTSESFSAT TAKKLSPPPA AALRLYRMGS GGSSVVLDPE NGLETESRKL PSSKYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEQEEAAR
101: SYDIAACRFR GRDAVVNFKN VLEDGDLAFL EAHSKAEIVD MLRKHTYADE LEQNNKRQLF LSVDANGKRN GSSTTQNDKV LKTREVLFEK AVTPSDVGKL
201: NRLVIPKQHA EKHFPLPSPS PAVTKGVLIN FEDVNGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLRAG DVVTFERSTG LERQLYIDWK VRSGPRENPV
301: QVVVRLFGVD IFNVTTVKPN DVVAVCGGKR SRDVDDMFAL RCSKKQAIIN AL

Arabidopsis Description

RAV2TEM2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.