Factsheet for TraesCS1B01G392200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G372200.1	Wheat	nucleus	93.03	93.7
TraesCS1D01G378400.1	Wheat	nucleus	91.83	92.72
TraesCS1D01G378800.1	Wheat	nucleus	91.35	91.57
TraesCS1B01G392000.1	Wheat	nucleus	87.5	88.56
TraesCS1B01G392300.1	Wheat	nucleus	82.21	87.47
HORVU1Hr1G082670.6	Barley	nucleus	80.05	84.73
KXG22484	Sorghum	nucleus, plastid	67.79	69.12
Zm00001d009468_P001	Maize	nucleus, plastid	61.54	68.27
Os05t0549800-01	Rice	nucleus	56.25	68.22
TraesCS3B01G293000.1	Wheat	nucleus	61.06	66.32
GSMUA_Achr1P21250_001	Banana	nucleus	41.59	58.84
CDY40973	Canola	nucleus	42.55	56.19
KRH34761	Soybean	nucleus	47.36	56.13
CDX97996	Canola	nucleus	43.51	55.69
CDY72302	Canola	nucleus	43.51	55.52
CDY58354	Canola	nucleus	43.27	55.21
CDY61361	Canola	nucleus	43.27	55.05
HORVU4Hr1G074300.4	Barley	nucleus	19.71	54.67
KRG92025	Soybean	nucleus	47.36	54.42
AT1G68840.1	Thale cress	nucleus	45.43	53.69
CDY24391	Canola	nucleus	43.51	53.55
AT3G25730.1	Thale cress	nucleus	42.79	53.45
CDX84999	Canola	nucleus	45.43	53.39
CDX81561	Canola	nucleus	43.99	53.35
Bra026917.1-P	Field mustard	nucleus	43.51	53.24
AT1G13260.1	Thale cress	nucleus	43.99	53.2
CDY36099	Canola	nucleus	44.71	53.14
Bra019821.1-P	Field mustard	nucleus	43.51	53.08
Bra026509.1-P	Field mustard	nucleus	41.59	53.07
Bra038346.1-P	Field mustard	nucleus, plastid	44.47	52.86
CDY45849	Canola	nucleus, plastid	44.47	52.86
TraesCS4B01G325600.1	Wheat	nucleus	38.94	52.6
CDY16133	Canola	nucleus	45.19	52.51
CDX99755	Canola	nucleus	42.79	52.35
Bra011002.1-P	Field mustard	nucleus	44.71	51.81
GSMUA_Achr6P01420_001	Banana	nucleus	39.18	51.58
VIT_01s0011g03070.t01	Wine grape	nucleus	46.63	51.32
AT1G25560.1	Thale cress	nucleus	44.47	51.25
CDX83547	Canola	nucleus	39.18	50.31
Bra024735.1-P	Field mustard	nucleus	44.95	50.27
KRH75484	Soybean	nucleus	46.39	50.26
KRH70603	Soybean	nucleus	48.08	49.88
TraesCS4B01G325700.1	Wheat	plastid	39.9	49.4
TraesCS3B01G064900.1	Wheat	nucleus	42.07	49.16
TraesCS3B01G065000.1	Wheat	mitochondrion, nucleus	25.72	49.08
Solyc05g009790.1.1	Tomato	nucleus	46.39	48.86
TraesCS3B01G065100.1	Wheat	nucleus	41.11	48.86
PGSC0003DMT400002125	Potato	nucleus	46.63	48.74
TraesCS7B01G362500.1	Wheat	nucleus	18.99	40.31
TraesCS5B01G126200.1	Wheat	nucleus	22.36	35.09
TraesCS1B01G215000.1	Wheat	nucleus	22.12	33.45
TraesCS4B01G117100.1	Wheat	nucleus	22.36	33.33
TraesCS2B01G482400.1	Wheat	nucleus	21.39	33.33
TraesCS4B01G348500.1	Wheat	nucleus	22.36	29.15
TraesCS6B01G286900.1	Wheat	nucleus	26.44	26.89
TraesCS2B01G412700.1	Wheat	nucleus	25.72	26.16

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR003340	InterPro:IPR015300	InterPro:IPR036955
PFAM:PF00847	PFAM:PF02362	PFscan:PS50863	PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF21
SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS1B01G392200	EnsemblPlants:TraesCS1B01G392200.1
TIGR:cd00018	TIGR:cd10017	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1B:+:625082599..625083849

Molecular Weight (calculated)

44679.6 Da

IEP (calculated)

10.011

GRAVY (calculated)

-0.377

Length

416 amino acids

Sequence
(BLAST)

001: MDSARSCLVD DVSSGASTGK KASPAAAGPA TKPLQRVGSG ASAVMDAPEP GAEADSGRVG RLPSSKYKGV VPQPNGRWGA QIYERHQRVW LGTFTGEAEA
101: ARAYDAAAQR FRGRDAVTNF RPLAESDPGD AAELRFLTAR SKAEVVDMLR KHIYPDELAQ YKRAFLASAA SSPTSSSSAP ASSAPSAAAP SAAARREYLF
201: DKTVTPSDVG KLNRLVIPKQ YAEKHFPLQL PSASAVVPGE CKGMLLNFDD AVGKMWRFRY SYWNSSQSYV LTKGWSRFVK EKGLHAGDAV GFYRSASGNN
301: QLFIDCKIRS KSTTTTTTTF LNAVAAPSPA PVTRTVRLFG VDLLAAPAPE HEEYGMAKTN KRSMDASVEA PTPAHAVWKK RCVDFALTYR LATAPEFPRS
401: RDQLEGVQAA GSTFAL

Best Arabidopsis Sequence Match ( AT1G25560.1 )
(BLAST)

001: MEYSCVDDSS TTSESLSIST TPKPTTTTEK KLSSPPATSM RLYRMGSGGS SVVLDSENGV ETESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN
101: EEEEAASSYD IAVRRFRGRD AVTNFKSQVD GNDAESAFLD AHSKAEIVDM LRKHTYADEF EQSRRKFVNG DGKRSGLETA TYGNDAVLRA REVLFEKTVT
201: PSDVGKLNRL VIPKQHAEKH FPLPAMTTAM GMNPSPTKGV LINLEDRTGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKNL RAGDVVCFER STGPDRQLYI
301: HWKVRSSPVQ TVVRLFGVNI FNVSNEKPND VAVECVGKKR SREDDLFSLG CSKKQAIINI L

Arabidopsis Description

TEM1AP2/ERF and B3 domain-containing transcription repressor TEM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6M5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.