Factsheet for TraesCS3B01G293000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G260100.1	Wheat	nucleus	94.26	96.52
TraesCS3A01G259900.1	Wheat	nucleus	91.12	93.07
HORVU3Hr1G064640.4	Barley	nucleus	90.08	90.79
HORVU3Hr1G064590.1	Barley	nucleus	45.43	89.69
Os01t0693400-01	Rice	nucleus	82.25	80.15
Zm00001d043782_P001	Maize	nucleus	80.42	79.18
EES03472	Sorghum	nucleus, plastid	81.46	75.54
Zm00001d011639_P001	Maize	nucleus	77.81	73.58
TraesCS1B01G392300.1	Wheat	nucleus	69.19	67.77
TraesCS1B01G392000.1	Wheat	nucleus	68.41	63.75
TraesCS1B01G392200.1	Wheat	nucleus, plastid	66.32	61.06
GSMUA_Achr1P21250_001	Banana	nucleus	46.74	60.88
CDX97996	Canola	nucleus	49.35	58.15
CDY72302	Canola	nucleus	49.35	57.98
CDY40973	Canola	nucleus	47.52	57.78
CDY36099	Canola	nucleus	52.74	57.71
CDY24391	Canola	nucleus	50.91	57.69
CDY58354	Canola	nucleus	49.09	57.67
CDY61361	Canola	nucleus	49.09	57.49
CDX84999	Canola	nucleus	53.0	57.34
CDY16133	Canola	nucleus	53.26	56.98
TraesCS4B01G325600.1	Wheat	nucleus	45.43	56.49
Bra011002.1-P	Field mustard	nucleus	52.48	55.99
Bra026917.1-P	Field mustard	nucleus	49.61	55.88
KRH34761	Soybean	nucleus	51.17	55.84
CDX81561	Canola	nucleus	49.87	55.69
AT3G25730.1	Thale cress	nucleus	48.3	55.56
Bra019821.1-P	Field mustard	nucleus	49.35	55.43
AT1G68840.1	Thale cress	nucleus	50.91	55.4
AT1G13260.1	Thale cress	nucleus	49.61	55.23
Bra026509.1-P	Field mustard	nucleus	47.0	55.21
Bra038346.1-P	Field mustard	nucleus, plastid	50.13	54.86
CDY45849	Canola	nucleus, plastid	50.13	54.86
Bra024735.1-P	Field mustard	nucleus	53.0	54.57
KRG92025	Soybean	nucleus	51.44	54.42
AT1G25560.1	Thale cress	nucleus	51.17	54.29
VIT_01s0011g03070.t01	Wine grape	nucleus	53.26	53.97
CDX99755	Canola	nucleus	47.78	53.82
GSMUA_Achr6P01420_001	Banana	nucleus	43.08	52.22
CDX83547	Canola	nucleus	44.13	52.16
KRH75484	Soybean	nucleus	52.22	52.08
PGSC0003DMT400002125	Potato	nucleus	53.26	51.26
TraesCS4B01G325700.1	Wheat	plastid	44.91	51.19
Solyc05g009790.1.1	Tomato	nucleus	52.74	51.14
TraesCS3B01G064900.1	Wheat	nucleus	47.52	51.12
TraesCS3B01G065100.1	Wheat	nucleus	45.95	50.29
KRH70603	Soybean	nucleus	52.48	50.12
TraesCS3B01G065000.1	Wheat	mitochondrion, nucleus	28.46	50.0
TraesCS7B01G362500.1	Wheat	nucleus	20.37	39.8
TraesCS5B01G126200.1	Wheat	nucleus	24.28	35.09
TraesCS1B01G215000.1	Wheat	nucleus	24.54	34.18
TraesCS2B01G482400.1	Wheat	nucleus	23.76	34.08
TraesCS4B01G117100.1	Wheat	nucleus	24.02	32.97
TraesCS4B01G348500.1	Wheat	nucleus	26.89	32.29
TraesCS6B01G286900.1	Wheat	nucleus	30.03	28.12
TraesCS2B01G412700.1	Wheat	nucleus	29.77	27.87

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR003340	InterPro:IPR015300	InterPro:IPR036955
PFAM:PF00847	PFAM:PF02362	PFscan:PS50863	PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF21
SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS3B01G293000	EnsemblPlants:TraesCS3B01G293000.1
TIGR:cd00018	TIGR:cd10017	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3B:-:471799767..471801255

Molecular Weight (calculated)

40275.3 Da

IEP (calculated)

9.635

GRAVY (calculated)

-0.337

Length

383 amino acids

Sequence
(BLAST)

001: MDSTSCLADD TSSGGASTDK LKALAAAAAA AAGPLERMGS GASAVLDAAE PGSEADSGGA GAGRAAAGKL PSSRFKGVVP QPNGRWGAQI YERHQRVWLG
101: TFAGEADAAR AYDVAAQRFR GRDAVTNFRP LADADPDAAA ELRFLAARSK AEVVDMLRKH TYFDELAQSK RAFAASAALS APTTSRGADG HASTPSPAAA
201: REHLFDKTVT PSDVGKLNRL VIPKQHAEKH FPLQLPAAGG ESKGLLLNFE DAAGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKGLGAGDV VGFYRSAAGS
301: TGEDTKLFID CKLRPDTNSP ASADPVDQSA PVQKAVRLFG VDLLTAPASP EQGMPGCKRA RDLVKSPPPK VAFKKQCIEL ALA

Best Arabidopsis Sequence Match ( AT1G13260.1 )
(BLAST)

001: MESSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS

Arabidopsis Description

RAV1AP2/ERF and B3 domain-containing transcription factor RAV1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.