Factsheet for TraesCS4B01G348500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G516600.1	Wheat	nucleus	95.61	96.21
HORVU4Hr1G084950.3	Barley	nucleus	88.71	82.99
HORVU7Hr1G046950.1	Barley	nucleus	64.26	74.82
Os03t0120900-01	Rice	nucleus	64.58	66.24
Zm00001d027409_P001	Maize	nucleus	63.32	61.77
OQU93364	Sorghum	nucleus	63.32	61.21
Zm00001d048815_P001	Maize	nucleus	41.07	56.47
Zm00001d010077_P001	Maize	nucleus	43.89	54.05
TraesCS1B01G215000.1	Wheat	nucleus	45.45	52.73
GSMUA_Achr4P30170_001	Banana	nucleus	38.24	49.0
GSMUA_Achr5P12850_001	Banana	nucleus	31.35	47.39
CDY67348	Canola	nucleus	22.26	47.33
GSMUA_Achr4P26430_001	Banana	nucleus	36.99	47.2
Bra040478.1-P	Field mustard	nucleus	41.38	45.05
CDX80053	Canola	nucleus	41.38	44.44
Bra004501.1-P	Field mustard	nucleus	41.38	44.44
GSMUA_Achr1P03600_001	Banana	nucleus	45.77	44.24
CDY48008	Canola	nucleus	42.01	44.08
CDY27515	Canola	nucleus	42.01	44.08
CDY41564	Canola	nucleus	40.75	43.77
CDY69432	Canola	nucleus	37.93	43.53
CDX67872	Canola	nucleus	38.24	42.81
Bra003482.1-P	Field mustard	nucleus	38.24	42.66
CDY50908	Canola	nucleus	42.01	42.54
CDX83351	Canola	nucleus	41.07	42.53
CDY43060	Canola	cytosol	21.63	42.33
Bra007646.1-P	Field mustard	nucleus	38.56	42.12
Bra000434.1-P	Field mustard	nucleus	40.75	41.94
CDY11388	Canola	nucleus	38.24	41.78
CDX76605	Canola	nucleus	38.24	41.78
AT2G46870.1	Thale cress	nucleus	40.44	41.61
Solyc08g013700.1.1	Tomato	nucleus	38.24	41.5
AT3G61970.1	Thale cress	nucleus	38.87	41.47
TraesCS7B01G362500.1	Wheat	nucleus	25.39	41.33
GSMUA_Achr4P24970_001	Banana	nucleus	30.41	41.28
TraesCS6B01G286900.1	Wheat	nucleus	52.04	40.59
PGSC0003DMT400015010	Potato	nucleus	37.93	40.33
CDY58763	Canola	nucleus	39.5	39.62
PGSC0003DMT400015011	Potato	nucleus	38.87	39.62
Solyc08g013690.1.1	Tomato	nucleus	40.13	39.51
CDY58764	Canola	nucleus	39.5	39.38
Bra014415.1-P	Field mustard	nucleus	39.5	39.38
GSMUA_Achr2P00400_001	Banana	nucleus	35.42	39.24
TraesCS2B01G482400.1	Wheat	nucleus	32.6	38.95
TraesCS5B01G126200.1	Wheat	nucleus	32.29	38.87
CDX90001	Canola	nucleus	41.69	38.66
Bra033294.1-P	Field mustard	nucleus	41.07	38.08
CDY15208	Canola	nucleus	38.24	37.89
GSMUA_Achr5P10220_001	Banana	nucleus	32.29	37.87
GSMUA_Achr9P18780_001	Banana	nucleus	33.86	37.76
TraesCS2B01G412700.1	Wheat	nucleus	48.28	37.65
TraesCS3B01G065000.1	Wheat	mitochondrion, nucleus	25.71	37.61
AT1G01030.1	Thale cress	nucleus	41.69	37.15
Solyc08g083400.2.1	Tomato	nucleus	38.87	37.13
GSMUA_Achr2P10230_001	Banana	nucleus	34.8	36.51
Bra030497.1-P	Field mustard	nucleus	40.44	36.44
TraesCS4B01G117100.1	Wheat	nucleus	31.66	36.2
GSMUA_Achr5P20340_001	Banana	nucleus	36.36	34.42
PGSC0003DMT400031863	Potato	nucleus	42.95	33.74
KRG97268	Soybean	nucleus	41.07	31.72
VIT_02s0025g03000.t01	Wine grape	nucleus	44.83	31.36
VIT_15s0048g02370.t01	Wine grape	nucleus	45.14	31.24
KRH68988	Soybean	nucleus	41.07	31.19
AT4G01500.1	Thale cress	nucleus	29.78	28.53
CDX97251	Canola	nucleus	30.09	28.32
KRH47753	Soybean	nucleus	44.2	28.2
Bra008552.1-P	Field mustard	nucleus	29.78	28.11
CDY49614	Canola	nucleus	26.65	27.42
Bra037417.1-P	Field mustard	nucleus	26.65	27.42
CDY07140	Canola	nucleus	26.02	27.12
TraesCS4B01G325600.1	Wheat	nucleus	26.02	26.95
TraesCS3B01G293000.1	Wheat	nucleus	32.29	26.89
TraesCS3B01G065100.1	Wheat	nucleus	27.59	25.14
TraesCS4B01G325700.1	Wheat	plastid	26.02	24.7
TraesCS3B01G064900.1	Wheat	nucleus	27.27	24.44
KRH06334	Soybean	nucleus	44.51	24.4
TraesCS1B01G392300.1	Wheat	nucleus	29.78	24.3
TraesCS1B01G392000.1	Wheat	nucleus	30.41	23.6
TraesCS1B01G392200.1	Wheat	nucleus, plastid	29.15	22.36

Protein Annotations

EnsemblPlants:TraesCS4B01G348500.1	EnsemblPlantsGene:TraesCS4B01G348500	Gene3D:2.40.330.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	InterPro:IPR003340	InterPro:IPR015300	PANTHER:PTHR31140
PANTHER:PTHR31140:SF4	PFAM:PF02362	PFscan:PS50863	SEG:seg	SMART:SM01019	SUPFAM:SSF101936
TIGR:cd10017	MapMan:15.5.5.3	:	:	:	:

Description

No Description!

Coordinates

chr4B:-:641890447..641891406

Molecular Weight (calculated)

34796.8 Da

IEP (calculated)

9.211

GRAVY (calculated)

-0.497

Length

319 amino acids

Sequence
(BLAST)

001: MEFTAIRAST AAAAGCSSPP PTADHKAEEE AAGAVEKEHM FDKVVTPSDV GKLNRLVIPK QHAEKYFPLD TSSTDKGLLL SFEDRAGKPW RFRYSYWNSS
101: QSYVMTKGWS RFVKEKRLDA GDTVSFGRGV GEAARGRLFI DWRRRPDVVL PPGHHRGFAL PSVPFSPWMA HPAGPGGAGG RMFLQATSPA TLYDYDAYQH
201: HHQRRHIGYD GYGAAPGRQV VYYQPQQQYH HQHPSLVLES VPVRMSMAAA PAHPEPSAVA TSGSKRVRLF GVNLECAADA EEDFSGPGRT ATTALQLLSP
301: ASSSSSSSGK ARCSLNLDL

Best Arabidopsis Sequence Match ( AT1G01030.2 )
(BLAST)

001: MDLSLAPTTT TSSDQEQDRD QELTSNIGAS SSSGPSGNNN NLPMMMIPPP EKEHMFDKVV TPSDVGKLNR LVIPKQHAER YFPLDSSNNQ NGTLLNFQDR
101: NGKMWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDIVS FQRGIGDESE RSKLYIDWRH RPDMSLVQAH QFEYNSVPIH RGLNIGNHQR SYYNTQRQEF
201: VGYGYGNLAG RCYYTGSPLD HRNIVGSEPL VIDSVPVVPG RLTPVMLPPL PPPPSTAGKR LRLFGVNMEC GNDYNQQEES WLVPRGEIGA SSSSSSALRL
301: NLSTDHDDDN DDGDDGDDDQ FAKKGKSSLS LNFNP

Arabidopsis Description

NGA3NGA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3T3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.