Factsheet for Bra000434.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83351	Canola	nucleus	97.74	98.38
Bra040478.1-P	Field mustard	nucleus	84.52	89.42
Bra004501.1-P	Field mustard	nucleus	84.84	88.55
AT2G46870.1	Thale cress	nucleus	81.61	81.61
Bra007646.1-P	Field mustard	nucleus	59.03	62.67
Bra003482.1-P	Field mustard	nucleus	57.74	62.59
Zm00001d035982_P001	Maize	nucleus	17.1	60.23
Bra014415.1-P	Field mustard	nucleus	59.35	57.5
TraesCS7A01G020800.1	Wheat	nucleus	28.39	44.44
TraesCS7A01G461000.1	Wheat	nucleus	27.74	44.1
TraesCS7D01G448900.1	Wheat	nucleus	27.42	43.37
GSMUA_Achr4P30170_001	Banana	nucleus	34.52	42.97
TraesCS7B01G362500.1	Wheat	nucleus	27.1	42.86
GSMUA_Achr4P26430_001	Banana	nucleus	34.52	42.8
Zm00001d048815_P001	Maize	nucleus	31.94	42.67
HORVU0Hr1G022200.1	Barley	nucleus	27.42	42.5
Os06t0107800-02	Rice	nucleus	27.1	42.21
TraesCS4A01G472700.1	Wheat	nucleus	29.03	41.47
TraesCS7A01G020700.1	Wheat	nucleus	28.39	40.93
TraesCS4B01G348500.1	Wheat	nucleus	41.94	40.75
TraesCS5A01G516600.1	Wheat	nucleus	41.61	40.69
TraesCS7D01G017000.1	Wheat	nucleus	28.39	40.55
Os03t0120900-01	Rice	nucleus	40.65	40.51
Zm00001d010077_P001	Maize	nucleus	33.55	40.15
Bra033294.1-P	Field mustard	nucleus	44.52	40.12
Zm00001d029749_P001	Maize	nucleus	35.16	39.93
EER92015	Sorghum	nucleus	35.16	39.78
Zm00001d035903_P001	Maize	nucleus	28.71	39.73
Zm00001d047359_P001	Maize	nucleus	35.48	39.71
TraesCS1B01G215000.1	Wheat	nucleus	35.16	39.64
Bra030497.1-P	Field mustard	nucleus	45.16	39.55
HORVU7Hr1G002230.1	Barley	nucleus	28.06	39.55
KXG19112	Sorghum	nucleus	26.13	39.51
Zm00001d024103_P001	Maize	nucleus	28.39	39.29
TraesCS1A01G200500.1	Wheat	nucleus	35.16	39.21
Bra001411.1-P	Field mustard	nucleus	29.35	38.56
GSMUA_Achr5P12850_001	Banana	nucleus	26.13	38.39
Bra017262.1-P	Field mustard	nucleus	30.32	38.37
GSMUA_Achr7P04630_001	Banana	nucleus	25.48	38.35
OQU93364	Sorghum	nucleus	40.65	38.18
Zm00001d027409_P001	Maize	nucleus	40.0	37.92
Os10t0537100-00	Rice	nucleus	38.06	37.82
Bra005301.1-P	Field mustard	nucleus	30.0	37.5
TraesCS1D01G203900.1	Wheat	nucleus	35.16	37.46
HORVU1Hr1G051780.2	Barley	nucleus	35.16	37.2
GSMUA_Achr4P12210_001	Banana	nucleus	26.77	37.05
HORVU4Hr1G084950.3	Barley	nucleus	40.65	36.95
HORVU7Hr1G046950.1	Barley	nucleus	32.26	36.5
GSMUA_Achr1P03600_001	Banana	nucleus	38.39	36.06
Bra034828.1-P	Field mustard	nucleus	30.0	36.05
Os04t0581400-01	Rice	nucleus	33.87	35.84
KXG19111	Sorghum	nucleus	27.42	35.71
GSMUA_Achr4P24970_001	Banana	nucleus	26.45	34.89
GSMUA_AchrUn_...	Banana	cytosol	27.1	34.85
Bra041023.1-P	Field mustard	nucleus	29.68	34.85
Bra005886.1-P	Field mustard	nucleus	30.0	34.83
KRH68988	Soybean	nucleus	47.1	34.76
KRG97268	Soybean	nucleus	45.81	34.38
GSMUA_Achr9P18780_001	Banana	nucleus	31.29	33.92
VIT_15s0048g02370.t01	Wine grape	nucleus	50.32	33.84
GSMUA_Achr5P10220_001	Banana	nucleus	29.68	33.82
TraesCS2B01G412700.1	Wheat	nucleus	44.52	33.74
TraesCS2A01G394700.1	Wheat	nucleus	43.55	33.42
Zm00001d024545_P001	Maize	nucleus	26.77	33.33
GSMUA_Achr2P10230_001	Banana	nucleus	32.58	33.22
EES13386	Sorghum	nucleus	27.1	33.2
Os02t0683500-01	Rice	nucleus	43.87	33.01
TraesCS2D01G392400.1	Wheat	nucleus	43.55	33.01
GSMUA_Achr2P00400_001	Banana	nucleus	30.65	32.99
Zm00001d026005_P001	Maize	nucleus	42.26	32.43
Zm00001d051471_P001	Maize	nucleus	43.87	32.38
HORVU6Hr1G066190.2	Barley	nucleus	42.26	32.03
Zm00001d002562_P001	Maize	nucleus	42.26	32.03
TraesCS6A01G259600.1	Wheat	nucleus	42.58	31.88
TraesCS6B01G286900.1	Wheat	nucleus	41.94	31.78
TraesCS6D01G240600.1	Wheat	nucleus	42.26	31.64
EES12712	Sorghum	nucleus	42.58	31.43
Zm00001d017618_P001	Maize	nucleus	42.26	31.04
Os08t0157700-00	Rice	nucleus	28.71	31.01
EES07445	Sorghum	nucleus	43.23	30.88
GSMUA_Achr5P20340_001	Banana	nucleus	32.9	30.27
VIT_02s0025g03000.t01	Wine grape	nucleus	44.19	30.04
KRH47753	Soybean	nucleus	47.42	29.4
Bra008552.1-P	Field mustard	nucleus	31.29	28.7
Bra037417.1-P	Field mustard	nucleus	27.42	27.42
Bra038346.1-P	Field mustard	nucleus, plastid	30.32	26.86
Bra009171.1-P	Field mustard	nucleus	20.0	25.94
Bra026917.1-P	Field mustard	nucleus	28.39	25.88
Bra019821.1-P	Field mustard	nucleus	28.39	25.81
KRH06334	Soybean	nucleus	47.42	25.26
Bra011002.1-P	Field mustard	nucleus	28.39	24.51
Bra026509.1-P	Field mustard	nucleus	25.48	24.23
Bra024735.1-P	Field mustard	nucleus	28.06	23.39
Bra018868.1-P	Field mustard	nucleus	19.35	17.75
Bra030458.1-P	Field mustard	nucleus	18.06	17.72
Bra030476.1-P	Field mustard	nucleus	18.39	17.54
Bra014282.1-P	Field mustard	nucleus	18.39	16.81
Bra018894.1-P	Field mustard	nucleus	17.74	16.27
Bra018854.1-P	Field mustard	nucleus	17.74	16.18
Bra018869.1-P	Field mustard	nucleus	16.77	15.57

Protein Annotations

MapMan:15.5.5.3	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra000434	EnsemblPlants:Bra000434.1	EnsemblPlants:Bra000434.1-P
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300
UniProt:M4C8A6	PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF38	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI000253FEC1	SEG:seg	:	:	:

Description

AT2G46870 (E=1e-116) NGA1 | NGA1 (NGATHA1); transcription factor

Coordinates

chrA03:+:11101748..11102680

Molecular Weight (calculated)

34826.7 Da

IEP (calculated)

7.683

GRAVY (calculated)

-0.691

Length

310 amino acids

Sequence
(BLAST)

001: MMTNLSLARE GEEEEEEAGA KKPTEEVERE HMFDKVVTPS DVGKLNRLVI PKQHAERYFP LDSSTNEKGL ILNFEDLTGK SWRFRYSYWN SSQSYVMTKG
101: WSRFVKDKKL DAGDIVSFLR CVGDTGRDSR LFIDWRRRPK VPDYTTSTSH FPAGAMFPRF YSFQTATTST SYNPYNHQQP RHHHSGYCYP QIPREFGYGY
201: VVRSVDQRAV VADPLVIESV PVMMHGGARV NQAAVGTAGK RLRLFGVDME CGESGGTNST EEESSSSGGS LPRGGASPSS SMFQLRLGNS SEDDHLFKKG
301: KSSLPFNLDQ

Best Arabidopsis Sequence Match ( AT2G46870.1 )
(BLAST)

001: MMTDLSLTRD EDEEEAKPLA EEEGAREVAD REHMFDKVVT PSDVGKLNRL VIPKQHAERF FPLDSSSNEK GLLLNFEDLT GKSWRFRYSY WNSSQSYVMT
101: KGWSRFVKDK KLDAGDIVSF QRCVGDSGRD SRLFIDWRRR PKVPDHPHFA AGAMFPRFYS FPSTNYSLYN HQQQRHHHSG GGYNYHQIPR EFGYGYFVRS
201: VDQRNNPAAA VADPLVIESV PVMMHGRANQ ELVGTAGKRL RLFGVDMECG ESGMTNSTEE ESSSSGGSLP RGGGGGASSS SFFQLRLGSS SEDDHFTKKG
301: KSSLSFDLDQ

Arabidopsis Description

NGA1B3 domain-containing transcription factor NGA1 [Source:UniProtKB/Swiss-Prot;Acc:O82799]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.