Factsheet for Bra009171.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70080	Canola	nucleus	99.58	99.58
CDX98911	Canola	nucleus	99.58	99.58
Bra005886.1-P	Field mustard	nucleus	73.64	65.92
AT5G06250.4	Thale cress	nucleus	75.73	63.73
Bra034828.1-P	Field mustard	nucleus	52.3	48.45
Bra041023.1-P	Field mustard	nucleus	51.05	46.21
Bra001411.1-P	Field mustard	nucleus	45.19	45.76
Bra017262.1-P	Field mustard	nucleus	40.59	39.59
Bra005301.1-P	Field mustard	nucleus	40.59	39.11
GSMUA_Achr6P35600_001	Banana	nucleus	29.71	29.34
TraesCS5B01G126200.1	Wheat	nucleus	32.22	29.06
GSMUA_Achr9P02600_001	Banana	nucleus	23.43	29.02
TraesCS5D01G134700.1	Wheat	nucleus	32.22	28.95
TraesCS2A01G460700.1	Wheat	nucleus	32.22	28.95
GSMUA_Achr3P19210_001	Banana	nucleus	24.27	28.86
TraesCS5A01G127100.1	Wheat	nucleus	31.8	28.57
TraesCS2D01G460900.1	Wheat	nucleus	31.8	28.46
TraesCS2B01G482400.1	Wheat	nucleus	31.38	28.09
VIT_08s0007g02810.t01	Wine grape	nucleus	33.47	28.07
GSMUA_Achr6P13140_001	Banana	nucleus	28.87	27.94
KRH67965	Soybean	nucleus	33.05	27.43
KXG27771	Sorghum	nucleus	30.96	27.01
KRG96220	Soybean	nucleus	33.47	26.76
TraesCS4A01G198300.2	Wheat	nucleus	30.96	26.52
TraesCS4B01G117100.1	Wheat	nucleus	30.54	26.16
TraesCS4D01G114900.1	Wheat	nucleus	30.54	25.89
Zm00001d023446_P001	Maize	nucleus	30.13	25.44
KRH32791	Soybean	nucleus	35.56	25.22
KRH72242	Soybean	nucleus	35.15	24.42
HORVU4Hr1G021650.22	Barley	nucleus	28.45	24.37
Solyc09g010230.1.1	Tomato	nucleus	35.15	24.35
Os11t0156000-01	Rice	nucleus	28.03	24.01
PGSC0003DMT400023077	Potato	nucleus	33.05	23.58
Zm00001d052591_P001	Maize	nucleus	30.13	23.45
HORVU5Hr1G040620.4	Barley	nucleus	26.36	22.99
GSMUA_Achr11P...	Banana	nucleus	17.15	22.16
KXG22988	Sorghum	plastid	29.29	21.88
GSMUA_Achr9P08980_001	Banana	nucleus	14.23	20.99
Bra040478.1-P	Field mustard	nucleus	25.52	20.82
Bra000434.1-P	Field mustard	nucleus	25.94	20.0
Bra004501.1-P	Field mustard	nucleus	24.27	19.53
Bra007646.1-P	Field mustard	nucleus	23.43	19.18
Bra003482.1-P	Field mustard	nucleus	22.59	18.88
Bra014415.1-P	Field mustard	nucleus	23.43	17.5
Os12t0157000-01	Rice	cytosol, nucleus	14.64	16.67
Bra026917.1-P	Field mustard	nucleus	23.01	16.18
Bra019821.1-P	Field mustard	nucleus	22.59	15.84
Bra030497.1-P	Field mustard	nucleus	23.43	15.82
Bra038346.1-P	Field mustard	nucleus, plastid	22.59	15.43
Bra033294.1-P	Field mustard	nucleus	22.18	15.41
Bra011002.1-P	Field mustard	nucleus	22.59	15.04
Bra026509.1-P	Field mustard	nucleus	20.5	15.03
Bra037417.1-P	Field mustard	nucleus	19.25	14.84
Bra008552.1-P	Field mustard	nucleus	20.08	14.2
Bra024735.1-P	Field mustard	nucleus	21.76	13.98
GSMUA_Achr6P18320_001	Banana	nucleus	18.83	13.24
Bra030458.1-P	Field mustard	nucleus	16.74	12.66
Bra018868.1-P	Field mustard	nucleus	16.32	11.54
Bra030476.1-P	Field mustard	nucleus	15.48	11.38
Bra018894.1-P	Field mustard	nucleus	15.9	11.24
Bra014282.1-P	Field mustard	nucleus	15.9	11.21
Bra018854.1-P	Field mustard	nucleus	15.9	11.18
Bra018869.1-P	Field mustard	nucleus	15.06	10.78

Protein Annotations

MapMan:15.5.5.3	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra009171	EnsemblPlants:Bra009171.1	EnsemblPlants:Bra009171.1-P
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300
UniProt:M4CY74	PFAM:PF02362	PANTHER:PTHR31140	PANTHER:PTHR31140:SF2	SUPFAM:SSF101936	UniParc:UPI0002544FDE
SEG:seg	:	:	:	:	:

Description

AT5G06250 (E=4e-040) | transcription factor

Coordinates

chrA10:-:15517949..15519799

Molecular Weight (calculated)

26479.1 Da

IEP (calculated)

6.262

GRAVY (calculated)

-0.755

Length

239 amino acids

Sequence
(BLAST)

001: MSVNHYSTDH HHHHNTLFWQ QLHTTDATET TTATWLNQDQ KESLFEKTLT PSDVGKLNRL VIPKQHAEKY FPLNAISNNA DASTEKGMLL SFEDELGKSW
101: RFRRGQGSSS AVANPTSYSS SMVAASPYLQ VHASSNYSNP PSHSEYSHYG AAVATASETH SIPSSSAVGS SRTVRLFGVN LECQRDEDDG DDSVAATTAT
201: ECPDGYYGQN MYYYYTPHPH NMNIAFTGDT MKQLGDRRG

Best Arabidopsis Sequence Match ( AT5G06250.4 )
(BLAST)

001: MSVNHYSTDH HHTLLWQQQQ HRHTTDTSET TTTATWLHDD LKESLFEKSL TPSDVGKLNR LVIPKQHAEK YFPLNAVLVS SAAADTSSSE KGMLLSFEDE
101: SGKSWRFRYS YWNSSQSYVL TKGWSRFVKD KQLDPGDVVF FQRHRSDSRR LFIGWRRRGQ GSSSSVAATN SAVNTSSMGA LSYHQIHATS NYSNPPSHSE
201: YSHYGAAVAT AAETHSTPSS SVVGSSRTVR LFGVNLECQM DENDGDDSVA VATTVESPDG YYGQNMYYYY SHPHNMNIAF TGER

Arabidopsis Description

AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BF34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.