Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P19210_001 | Banana | nucleus | 48.99 | 60.2 |
| GSMUA_Achr9P02600_001 | Banana | nucleus | 43.72 | 55.96 |
| TraesCS5B01G126200.1 | Wheat | nucleus | 57.49 | 53.58 |
| TraesCS5D01G134700.1 | Wheat | nucleus | 57.09 | 53.01 |
| TraesCS5A01G127100.1 | Wheat | nucleus | 56.68 | 52.63 |
| TraesCS2D01G460900.1 | Wheat | nucleus | 56.28 | 52.06 |
| TraesCS2B01G482400.1 | Wheat | nucleus | 55.87 | 51.69 |
| TraesCS2A01G460700.1 | Wheat | nucleus | 55.06 | 51.13 |
| GSMUA_Achr6P35600_001 | Banana | nucleus | 48.18 | 49.17 |
| GSMUA_Achr11P... | Banana | nucleus | 36.44 | 48.65 |
| KXG27771 | Sorghum | nucleus | 53.04 | 47.81 |
| TraesCS4B01G117100.1 | Wheat | nucleus | 53.04 | 46.95 |
| Zm00001d023446_P001 | Maize | nucleus | 53.44 | 46.64 |
| Os11t0156000-01 | Rice | nucleus | 52.63 | 46.59 |
| TraesCS4A01G198300.2 | Wheat | nucleus | 52.23 | 46.24 |
| TraesCS4D01G114900.1 | Wheat | nucleus | 52.63 | 46.1 |
| HORVU5Hr1G040620.4 | Barley | nucleus | 49.39 | 44.53 |
| GSMUA_Achr9P08980_001 | Banana | nucleus | 29.15 | 44.44 |
| HORVU4Hr1G021650.22 | Barley | nucleus | 50.2 | 44.44 |
| CDX84162 | Canola | nucleus | 42.91 | 43.62 |
| CDY43751 | Canola | nucleus | 42.91 | 43.62 |
| AT2G36080.1 | Thale cress | nucleus | 42.91 | 43.44 |
| Bra017262.1-P | Field mustard | nucleus | 42.91 | 43.27 |
| Bra005301.1-P | Field mustard | nucleus | 42.91 | 42.74 |
| CDX75073 | Canola | nucleus | 42.91 | 42.74 |
| Bra001411.1-P | Field mustard | nucleus | 40.49 | 42.37 |
| CDX73868 | Canola | nucleus | 40.49 | 42.37 |
| Zm00001d052591_P001 | Maize | nucleus | 52.23 | 42.02 |
| CDY08512 | Canola | nucleus | 41.3 | 41.13 |
| KXG22988 | Sorghum | plastid | 53.04 | 40.94 |
| CDY62470 | Canola | nucleus | 37.65 | 40.79 |
| Bra034828.1-P | Field mustard | nucleus | 42.11 | 40.31 |
| CDY01036 | Canola | nucleus | 41.7 | 40.08 |
| VIT_08s0007g02810.t01 | Wine grape | nucleus | 45.34 | 39.3 |
| Bra005886.1-P | Field mustard | nucleus | 41.7 | 38.58 |
| CDY47260 | Canola | nucleus | 41.7 | 38.58 |
| Bra041023.1-P | Field mustard | nucleus | 40.49 | 37.88 |
| AT5G06250.4 | Thale cress | nucleus | 42.11 | 36.62 |
| PGSC0003DMT400072354 | Potato | nucleus | 42.11 | 36.11 |
| GSMUA_Achr4P30170_001 | Banana | nucleus | 35.22 | 34.94 |
| Os12t0157000-01 | Rice | cytosol, nucleus | 29.55 | 34.76 |
| KRH67965 | Soybean | nucleus | 40.49 | 34.72 |
| Solyc10g083210.1.1 | Tomato | nucleus | 42.91 | 34.42 |
| GSMUA_Achr4P26430_001 | Banana | nucleus | 34.82 | 34.4 |
| CDX80996 | Canola | nucleus | 38.06 | 34.18 |
| KRG96220 | Soybean | nucleus | 41.3 | 34.11 |
| KRH32791 | Soybean | nucleus | 44.53 | 32.64 |
| KRH72242 | Soybean | nucleus | 44.94 | 32.27 |
| PGSC0003DMT400023077 | Potato | nucleus | 43.32 | 31.94 |
| Solyc09g010230.1.1 | Tomato | nucleus | 44.53 | 31.88 |
| GSMUA_Achr7P04630_001 | Banana | nucleus | 26.32 | 31.55 |
| GSMUA_Achr5P12850_001 | Banana | nucleus | 26.32 | 30.81 |
| GSMUA_Achr4P12210_001 | Banana | nucleus | 27.53 | 30.36 |
| GSMUA_Achr1P03600_001 | Banana | nucleus | 39.27 | 29.39 |
| GSMUA_AchrUn_... | Banana | cytosol | 28.34 | 29.05 |
| Bra009171.1-P | Field mustard | nucleus | 27.94 | 28.87 |
| CDX98911 | Canola | nucleus | 27.94 | 28.87 |
| CDY70080 | Canola | nucleus | 27.94 | 28.87 |
| AT3G11580.3 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 42.51 | 28.3 |
| GSMUA_Achr4P24970_001 | Banana | nucleus | 26.32 | 27.66 |
| GSMUA_Achr6P01420_001 | Banana | nucleus | 34.01 | 26.58 |
| GSMUA_Achr1P21250_001 | Banana | nucleus | 31.58 | 26.53 |
| GSMUA_Achr6P18320_001 | Banana | nucleus | 35.63 | 25.88 |
| GSMUA_Achr1P05400_001 | Banana | nucleus | 31.17 | 25.84 |
| GSMUA_Achr5P09950_001 | Banana | nucleus | 33.6 | 25.78 |
| GSMUA_Achr5P20340_001 | Banana | nucleus | 34.41 | 25.22 |
| GSMUA_Achr5P10220_001 | Banana | nucleus | 27.53 | 25.0 |
| GSMUA_Achr2P22560_001 | Banana | nucleus | 31.17 | 24.84 |
| GSMUA_Achr2P10230_001 | Banana | nucleus | 30.36 | 24.67 |
| GSMUA_Achr9P18780_001 | Banana | nucleus | 27.94 | 24.13 |
| GSMUA_Achr2P00400_001 | Banana | nucleus | 27.53 | 23.61 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.39 | 21.39 |
| GSMUA_Achr6P09880_001 | Banana | nucleus | 24.7 | 21.11 |
| GSMUA_Achr4P06710_001 | Banana | nucleus | 29.15 | 20.57 |
| GSMUA_Achr3P29380_001 | Banana | nucleus | 21.05 | 19.77 |
| GSMUA_Achr4P03670_001 | Banana | nucleus | 22.67 | 19.05 |
| GSMUA_Achr3P21100_001 | Banana | nucleus | 31.58 | 18.93 |
| GSMUA_Achr9P21470_001 | Banana | nucleus | 23.08 | 18.39 |
| GSMUA_Achr10P... | Banana | nucleus | 20.65 | 17.47 |
| GSMUA_Achr8P14650_001 | Banana | nucleus | 26.72 | 15.94 |
| GSMUA_Achr11P... | Banana | nucleus | 20.65 | 15.18 |
Protein Annotations
| MapMan:15.5.5.3 | Gene3D:2.40.330.10 | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr6G13140_001 | EnsemblPlants:GSMUA_Achr6P13140_001 | EnsemblPlants:GSMUA_Achr6T13140_001 | InterPro:IPR003340 | InterPro:IPR015300 |
| UniProt:M0T6L2 | PFAM:PF02362 | PFscan:PS50863 | PANTHER:PTHR31140 | PANTHER:PTHR31140:SF2 | SMART:SM01019 |
| SUPFAM:SSF101936 | UniParc:UPI000294EDFE | SEG:seg | : | : | : |
Description
Putative uncharacterized protein Sb05g003450 [Source:GMGC_GENE;Acc:GSMUA_Achr6G13140_001]
Coordinates
chr6:+:8801379..8802196
Molecular Weight (calculated)
28073.0 Da
IEP (calculated)
10.317
GRAVY (calculated)
-1.006
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQQQQQQQQ QHHHGTWPRE PAMHLYHHPC QLEQREGHHE REQMFEKCLT PSDVGKLNRL VIPKQHAEKY FPLDGNSGEK DLALSFEDET GKPWRFRYSY
101: WSSSQSYVLT KGWSRFVKEK KLDAGDVVLF QRPRGGGDRL YIGCRRQGAN ETPSPARTAT RLNEKAPWSR VHRTASGPHP VSPSGACSRQ APVQQDGLRH
201: AGRRSLRPCD NTAVAPGGKA KRLRLFGVNL ECGPASDRRP LHSASWL
101: WSSSQSYVLT KGWSRFVKEK KLDAGDVVLF QRPRGGGDRL YIGCRRQGAN ETPSPARTAT RLNEKAPWSR VHRTASGPHP VSPSGACSRQ APVQQDGLRH
201: AGRRSLRPCD NTAVAPGGKA KRLRLFGVNL ECGPASDRRP LHSASWL
001: MSVNHYSTDH HHTLLWQQQQ HRHTTDTSET TTTATWLHDD LKESLFEKSL TPSDVGKLNR LVIPKQHAEK YFPLNAVLVS SAAADTSSSE KGMLLSFEDE
101: SGKSWRFRYS YWNSSQSYVL TKGWSRFVKD KQLDPGDVVF FQRHRSDSRR LFIGWRRRGQ GSSSSVAATN SAVNTSSMGA LSYHQIHATS NYSNPPSHSE
201: YSHYGAAVAT AAETHSTPSS SVVGSSRTVR LFGVNLECQM DENDGDDSVA VATTVESPDG YYGQNMYYYY SHPHNMNIAF TGER
101: SGKSWRFRYS YWNSSQSYVL TKGWSRFVKD KQLDPGDVVF FQRHRSDSRR LFIGWRRRGQ GSSSSVAATN SAVNTSSMGA LSYHQIHATS NYSNPPSHSE
201: YSHYGAAVAT AAETHSTPSS SVVGSSRTVR LFGVNLECQM DENDGDDSVA VATTVESPDG YYGQNMYYYY SHPHNMNIAF TGER
Arabidopsis Description
AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BF34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.