Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra041023.1-P | Field mustard | nucleus | 87.28 | 75.38 |
| CDX73868 | Canola | nucleus | 71.49 | 69.07 |
| CDY08512 | Canola | nucleus | 66.67 | 61.29 |
| CDY01036 | Canola | nucleus | 67.11 | 59.53 |
| CDX75073 | Canola | nucleus | 50.0 | 45.97 |
| CDY43751 | Canola | nucleus | 48.68 | 45.68 |
| AT3G11580.3 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 74.12 | 45.55 |
| CDY47260 | Canola | nucleus | 53.07 | 45.32 |
| CDX84162 | Canola | nucleus | 48.25 | 45.27 |
| CDX80996 | Canola | nucleus | 52.63 | 43.64 |
| GSMUA_Achr9P02600_001 | Banana | nucleus | 36.84 | 43.52 |
| GSMUA_Achr3P19210_001 | Banana | nucleus | 35.96 | 40.8 |
| CDY67348 | Canola | nucleus | 26.32 | 40.0 |
| GSMUA_Achr6P35600_001 | Banana | nucleus | 40.79 | 38.43 |
| TraesCS5A01G127100.1 | Wheat | nucleus | 44.3 | 37.97 |
| TraesCS5D01G134700.1 | Wheat | nucleus | 44.3 | 37.97 |
| TraesCS5B01G126200.1 | Wheat | nucleus | 43.86 | 37.74 |
| GSMUA_Achr6P13140_001 | Banana | nucleus | 40.79 | 37.65 |
| TraesCS4A01G198300.2 | Wheat | nucleus | 46.05 | 37.63 |
| GSMUA_Achr9P08980_001 | Banana | nucleus | 26.32 | 37.04 |
| HORVU4Hr1G021650.22 | Barley | nucleus | 45.18 | 36.92 |
| TraesCS4B01G117100.1 | Wheat | nucleus | 45.18 | 36.92 |
| TraesCS4D01G114900.1 | Wheat | nucleus | 45.18 | 36.52 |
| TraesCS2A01G460700.1 | Wheat | nucleus | 42.54 | 36.47 |
| TraesCS2B01G482400.1 | Wheat | nucleus | 42.54 | 36.33 |
| TraesCS2D01G460900.1 | Wheat | nucleus | 42.11 | 35.96 |
| CDX98911 | Canola | nucleus | 37.28 | 35.56 |
| CDY70080 | Canola | nucleus | 37.28 | 35.56 |
| KRH67965 | Soybean | nucleus | 43.86 | 34.72 |
| KXG27771 | Sorghum | nucleus | 41.67 | 34.67 |
| GSMUA_Achr11P... | Banana | nucleus | 28.07 | 34.59 |
| HORVU5Hr1G040620.4 | Barley | nucleus | 41.23 | 34.31 |
| CDY43060 | Canola | cytosol | 24.12 | 33.74 |
| Os11t0156000-01 | Rice | nucleus | 41.23 | 33.69 |
| Zm00001d023446_P001 | Maize | nucleus | 41.67 | 33.57 |
| KRG96220 | Soybean | nucleus | 43.86 | 33.44 |
| VIT_08s0007g02810.t01 | Wine grape | nucleus | 41.67 | 33.33 |
| KRH32791 | Soybean | nucleus | 47.81 | 32.34 |
| Zm00001d052591_P001 | Maize | nucleus | 42.11 | 31.27 |
| KRH72242 | Soybean | nucleus | 46.93 | 31.1 |
| KXG22988 | Sorghum | plastid | 42.98 | 30.62 |
| CDY48008 | Canola | nucleus | 37.28 | 27.96 |
| CDY41564 | Canola | nucleus | 36.4 | 27.95 |
| CDX80053 | Canola | nucleus | 36.4 | 27.95 |
| Solyc09g010230.1.1 | Tomato | nucleus | 42.11 | 27.83 |
| CDX67872 | Canola | nucleus | 34.65 | 27.72 |
| CDY69432 | Canola | nucleus | 33.77 | 27.7 |
| CDY27515 | Canola | nucleus | 36.84 | 27.63 |
| CDY11388 | Canola | nucleus | 35.09 | 27.4 |
| CDX76605 | Canola | nucleus | 35.09 | 27.4 |
| CDY50908 | Canola | nucleus | 37.28 | 26.98 |
| CDX83351 | Canola | nucleus | 35.96 | 26.62 |
| PGSC0003DMT400023077 | Potato | nucleus | 39.04 | 26.57 |
| CDY58763 | Canola | nucleus | 34.65 | 24.84 |
| CDY58764 | Canola | nucleus | 34.65 | 24.69 |
| CDX97996 | Canola | nucleus | 34.65 | 24.31 |
| CDY61361 | Canola | nucleus | 34.65 | 24.16 |
| CDY58354 | Canola | nucleus | 34.21 | 23.93 |
| CDY72302 | Canola | nucleus | 33.77 | 23.62 |
| CDY15208 | Canola | nucleus | 33.33 | 23.6 |
| CDY24391 | Canola | nucleus | 34.65 | 23.37 |
| CDX81561 | Canola | nucleus | 35.09 | 23.32 |
| CDY40973 | Canola | nucleus | 32.02 | 23.17 |
| Os12t0157000-01 | Rice | cytosol, nucleus | 21.05 | 22.86 |
| CDY45849 | Canola | nucleus, plastid | 34.65 | 22.57 |
| CDY36099 | Canola | nucleus | 34.65 | 22.57 |
| CDX90001 | Canola | nucleus | 33.77 | 22.38 |
| CDX84999 | Canola | nucleus | 34.65 | 22.32 |
| CDX97251 | Canola | nucleus | 32.89 | 22.12 |
| CDY16133 | Canola | nucleus | 34.21 | 21.79 |
| CDY07140 | Canola | nucleus | 28.95 | 21.57 |
| CDY49614 | Canola | nucleus | 28.95 | 21.29 |
| GSMUA_Achr6P18320_001 | Banana | nucleus | 31.58 | 21.18 |
| CDX99755 | Canola | nucleus | 31.58 | 21.18 |
| CDY29599 | Canola | nucleus | 24.12 | 16.92 |
| CDY65812 | Canola | nucleus | 20.61 | 16.73 |
| CDX83547 | Canola | nucleus | 23.25 | 16.36 |
| CDY29620 | Canola | nucleus | 24.12 | 15.99 |
| CDY22826 | Canola | nucleus | 23.68 | 15.98 |
| CDY51249 | Canola | nucleus | 23.68 | 15.93 |
| CDY46564 | Canola | nucleus | 23.68 | 15.93 |
| CDY37109 | Canola | nucleus | 23.25 | 15.92 |
| CDY22814 | Canola | nucleus | 23.25 | 15.73 |
| CDY35575 | Canola | nucleus | 23.68 | 15.65 |
| CDY37130 | Canola | nucleus | 23.25 | 15.63 |
| CDY25209 | Canola | nucleus | 23.25 | 14.93 |
| CDY22801 | Canola | nucleus | 22.37 | 14.66 |
| CDY37108 | Canola | nucleus, plastid | 20.18 | 13.41 |
Protein Annotations
| MapMan:15.5.5.3 | Gene3D:2.40.330.10 | GO:A0A078JDE1 | UniProt:A0A078JDE1 | InterPro:B3_DNA-bd | EnsemblPlants:CDY62470 |
| ProteinID:CDY62470 | ProteinID:CDY62470.1 | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00036312001 | InterPro:IPR003340 | InterPro:IPR015300 | PFAM:PF02362 | PFscan:PS50863 | PANTHER:PTHR31140 |
| PANTHER:PTHR31140:SF2 | SMART:SM01019 | SUPFAM:SSF101936 | TMHMM:TMhelix | UniParc:UPI0004EE0E46 | : |
Description
BnaC01g44850DBnaC01g44850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JDE1]
Coordinates
chrLK034149:+:10332..11018
Molecular Weight (calculated)
26562.1 Da
IEP (calculated)
9.150
GRAVY (calculated)
-0.557
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGNHYSRDI QHNTPSVHHH QNYAVVDREY LFEKSLTPSD VGKLNRLVIP KQHAEKHFPL NNAGDDVAAA ETTEKGMLLT FEDESGKCWK FRYSYWNSSQ
101: SYVLTKGWSR YVKDKHLHAG DVVFFQRHRF DLHRVFIGWR KRGEVSSPTA VSVVSQEARV NTTAYWSGLT TPYRQVHAST SSYPNIHQEY SHYGKTLYLL
201: SQFVFCYFSL IHVSDIYTLS VFKDMCHR
101: SYVLTKGWSR YVKDKHLHAG DVVFFQRHRF DLHRVFIGWR KRGEVSSPTA VSVVSQEARV NTTAYWSGLT TPYRQVHAST SSYPNIHQEY SHYGKTLYLL
201: SQFVFCYFSL IHVSDIYTLS VFKDMCHR
001: MSVNHYHNTL SLHHHHQNDV AIAQRESLFE KSLTPSDVGK LNRLVIPKQH AEKYFPLNNN NNNGGSGDDV ATTEKGMLLS FEDESGKCWK FRYSYWNSSQ
101: SYVLTKGWSR YVKDKHLDAG DVVFFQRHRF DLHRLFIGWR RRGEASSSPA VSVVSQEALV NTTAYWSGLT TPYRQVHAST TYPNIHQEYS HYGKFKPFIS
201: SFVFSFSLIY MSDLYSSLFS FKICLFHKNR
101: SYVLTKGWSR YVKDKHLDAG DVVFFQRHRF DLHRLFIGWR RRGEASSSPA VSVVSQEALV NTTAYWSGLT TPYRQVHAST TYPNIHQEYS HYGKFKPFIS
201: SFVFSFSLIY MSDLYSSLFS FKICLFHKNR
Arabidopsis Description
AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LT60]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.