Factsheet for Solyc09g010230.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023077	Potato	nucleus	78.84	81.19
Solyc10g083210.1.1	Tomato	nucleus	59.71	66.88
VIT_08s0007g02810.t01	Wine grape	nucleus	48.7	58.95
CDY43751	Canola	nucleus	35.36	50.21
AT2G36080.1	Thale cress	nucleus	35.07	49.59
CDX73868	Canola	nucleus	33.91	49.58
Bra001411.1-P	Field mustard	nucleus	33.91	49.58
Bra017262.1-P	Field mustard	nucleus	35.07	49.39
CDY08512	Canola	nucleus	35.36	49.19
CDY01036	Canola	nucleus	36.52	49.03
Bra034828.1-P	Field mustard	nucleus	36.23	48.45
CDX75073	Canola	nucleus	34.78	48.39
Bra005301.1-P	Field mustard	nucleus	34.49	47.98
CDX84162	Canola	nucleus	33.62	47.74
GSMUA_Achr9P02600_001	Banana	nucleus	26.38	47.15
GSMUA_Achr3P19210_001	Banana	nucleus	26.96	46.27
KRH67965	Soybean	nucleus	38.55	46.18
Bra041023.1-P	Field mustard	nucleus	34.78	45.45
GSMUA_Achr9P08980_001	Banana	nucleus	21.16	45.06
GSMUA_Achr6P13140_001	Banana	nucleus	31.88	44.53
Bra005886.1-P	Field mustard	nucleus	34.2	44.19
CDY47260	Canola	nucleus	34.2	44.19
GSMUA_Achr6P35600_001	Banana	nucleus	30.72	43.8
TraesCS5B01G126200.1	Wheat	nucleus	33.62	43.77
TraesCS5A01G127100.1	Wheat	nucleus	33.62	43.61
TraesCS5D01G134700.1	Wheat	nucleus	33.62	43.61
KRG96220	Soybean	nucleus	37.39	43.14
AT5G06250.4	Thale cress	nucleus	35.36	42.96
KRH32791	Soybean	nucleus	41.74	42.73
KRH72242	Soybean	nucleus	42.03	42.15
CDY62470	Canola	nucleus	27.83	42.11
TraesCS2B01G482400.1	Wheat	nucleus	32.46	41.95
TraesCS2A01G460700.1	Wheat	nucleus	32.17	41.73
KXG27771	Sorghum	nucleus	33.04	41.61
TraesCS2D01G460900.1	Wheat	nucleus	31.88	41.2
Zm00001d023446_P001	Maize	nucleus	33.04	40.28
GSMUA_Achr11P...	Banana	nucleus	21.45	40.0
TraesCS4B01G117100.1	Wheat	nucleus	32.17	39.78
Os11t0156000-01	Rice	nucleus	31.88	39.43
TraesCS4A01G198300.2	Wheat	nucleus	31.88	39.43
HORVU5Hr1G040620.4	Barley	nucleus	30.72	38.69
TraesCS4D01G114900.1	Wheat	nucleus	31.59	38.65
CDX80996	Canola	nucleus	30.14	37.82
HORVU4Hr1G021650.22	Barley	nucleus	30.43	37.63
KXG22988	Sorghum	plastid	33.33	35.94
Zm00001d052591_P001	Maize	nucleus	31.59	35.5
Bra009171.1-P	Field mustard	nucleus	24.35	35.15
CDY70080	Canola	nucleus	24.06	34.73
CDX98911	Canola	nucleus	24.06	34.73
AT3G11580.3	Thale cress	cytosol, endoplasmic reticulum, nucleus	36.23	33.69
Solyc08g013700.1.1	Tomato	nucleus	26.96	31.63
Solyc08g013690.1.1	Tomato	nucleus	28.12	29.94
Solyc08g083400.2.1	Tomato	nucleus	27.25	28.14
Os12t0157000-01	Rice	cytosol, nucleus	16.81	27.62
Solyc04g007000.1.1	Tomato	nucleus	25.8	23.92
GSMUA_Achr6P18320_001	Banana	nucleus	23.48	23.82
Solyc05g009790.1.1	Tomato	nucleus	26.67	23.29
Solyc12g098460.1.1	Tomato	nucleus	13.04	21.53
Solyc03g083110.1.1	Tomato	nucleus	16.81	17.31

Protein Annotations

MapMan:15.5.5.3	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	UniProt:K4CR51	PFAM:PF02362	PFscan:PS50863
PANTHER:PTHR31140	PANTHER:PTHR31140:SF2	SMART:SM01019	SUPFAM:SSF101936	EnsemblPlantsGene:Solyc09g010230.1	EnsemblPlants:Solyc09g010230.1.1
UniParc:UPI000276CAF4	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr9:+:3624972..3628689

Molecular Weight (calculated)

39114.7 Da

IEP (calculated)

7.591

GRAVY (calculated)

-0.998

Length

345 amino acids

Sequence
(BLAST)

001: MSINHISSET FWWTKKQPPS FPNMFEFNLN NNMNNNSTNE DDELVQNEDK FEEIPRDHLF EKPLTPSDVG KLNRLVIPKQ HAEKYFPLSG SNNSNSNNNN
101: IDGGTEKGLL LSFEDESGKS WRFRYSYWNS SQSYVLTKGW SRFVKEKRLD AGDIVLFDRH RSDTDRLFIG WRRRNIISAP ISTAAVRHNT AAAMTGNIGG
201: GGGGWAHVYY GGHPYPRAGA GLPYQPDCLH AGRGAMQNQT TTSVNNNTRR HVRLFGVNLE CEADDSSWSE PPPTPDGGGS STSSHHQDHG RSQDQASQHY
301: YQYQFQYSKP HVAVSATASS YNNNHHNHKD MNFSRDVNQM RYHQG

Best Arabidopsis Sequence Match ( AT2G36080.3 )
(BLAST)

001: MSINQYSSDF HYHSLMWQQQ QQQQQHQNDV VEEKEALFEK PLTPSDVGKL NRLVIPKQHA ERYFPLAAAA ADAVEKGLLL CFEDEEGKPW RFRYSYWNSS
101: QSYVLTKGWS RYVKEKHLDA GDVVLFHRHR SDGGRFFIGW RRRGDSSSSS DSYRHVQSNA SLQYYPHAGA QAVESQRGNS KTLRLFGVNM ECQLDSDWSE
201: PSTPDGSNTY TTNHDQFHFY PQQQHYPPPY YMVR

Arabidopsis Description

ARF31B3 domain-containing protein At2g36080 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.