Factsheet for Solyc10g083210.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072354	Potato	nucleus	91.56	97.92
Solyc09g010230.1.1	Tomato	nucleus	66.88	59.71
GSMUA_Achr3P19210_001	Banana	nucleus	30.84	47.26
GSMUA_Achr9P02600_001	Banana	nucleus	29.22	46.63
GSMUA_Achr6P13140_001	Banana	nucleus	34.42	42.91
GSMUA_Achr6P35600_001	Banana	nucleus	33.44	42.56
TraesCS5D01G134700.1	Wheat	nucleus	35.71	41.35
TraesCS5B01G126200.1	Wheat	nucleus	35.39	41.13
GSMUA_Achr11P...	Banana	nucleus	24.68	41.08
TraesCS5A01G127100.1	Wheat	nucleus	35.39	40.98
GSMUA_Achr9P08980_001	Banana	nucleus	21.1	40.12
KXG27771	Sorghum	nucleus	35.06	39.42
TraesCS2B01G482400.1	Wheat	nucleus	34.09	39.33
TraesCS2A01G460700.1	Wheat	nucleus	33.77	39.1
TraesCS4B01G117100.1	Wheat	nucleus	35.06	38.71
TraesCS4A01G198300.2	Wheat	nucleus	35.06	38.71
TraesCS2D01G460900.1	Wheat	nucleus	33.44	38.58
TraesCS4D01G114900.1	Wheat	nucleus	35.06	38.3
Os11t0156000-01	Rice	nucleus	34.09	37.63
HORVU5Hr1G040620.4	Barley	nucleus	32.79	36.86
Zm00001d023446_P001	Maize	nucleus	33.44	36.4
HORVU4Hr1G021650.22	Barley	nucleus	32.14	35.48
Zm00001d052591_P001	Maize	nucleus	33.44	33.55
KXG22988	Sorghum	plastid	34.09	32.81
Solyc08g013700.1.1	Tomato	nucleus	28.9	30.27
Solyc08g013690.1.1	Tomato	nucleus	30.52	29.01
Solyc08g083400.2.1	Tomato	nucleus	28.25	26.05
Os12t0157000-01	Rice	cytosol, nucleus	16.88	24.76
Solyc04g007000.1.1	Tomato	nucleus	28.57	23.66
Solyc05g009790.1.1	Tomato	nucleus	29.22	22.78
GSMUA_Achr6P18320_001	Banana	nucleus	24.68	22.35
Solyc12g098460.1.1	Tomato	nucleus	12.99	19.14
Solyc03g083110.1.1	Tomato	nucleus	20.45	18.81

Protein Annotations

MapMan:15.5.5.3	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	UniProt:K4D3A8	PFAM:PF02362	PFscan:PS50863
PANTHER:PTHR31140	PANTHER:PTHR31140:SF2	SMART:SM01019	SUPFAM:SSF101936	EnsemblPlantsGene:Solyc10g083210.1	EnsemblPlants:Solyc10g083210.1.1
UniParc:UPI0002769D9F	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:+:63076400..63080922

Molecular Weight (calculated)

35141.2 Da

IEP (calculated)

6.936

GRAVY (calculated)

-0.931

Length

308 amino acids

Sequence
(BLAST)

001: MSITHFSSQN YFFSEHYNFM EESLRNSSSP PKQNSNQLEE IEIPKEHLFE KPLTPSDVGK LNRLVIPKQN AEKYFPLNDS INDSGEKGFL LSFEDELGKL
101: WKFRYSYWNS SQSYVLTKGW SRFVKEKKLD AGDVVLFERH RVDGDRQFIG WRRKNGAAVA AASATTVAPP GGGGGWGQIH PFPSAAGVPY QTDFLHAGRG
201: VMHNQLTTPN GNNTRRQVRL FGVNLECEVD DSSSWSESST PDGSISSNHH QQSQEYYQSQ AGQHYYQYQV HYSNPHANPP ASSYNNNHHY NTDMDYSRDV
301: NQMRYHQG

Best Arabidopsis Sequence Match ( AT5G06250.5 )
(BLAST)

001: MSVNHYSTDH HHTLLWQQQQ HRHTTDTSET TTTATWLHDD LKESLFEKSL TPSDVGKLNR LVIPKQHAEK YFPLNAVLVS SAAADTSSSE KGMLLSFEDE
101: SGKSWRFRYS YWNSSQSYVL TKGWSRFVKD KQLDPGDVVF FQRHRSDSRR LFIGWRRRGQ GSSSSVAATN SAVNTSSMGA LSYHQIHATS NYSNPPSHSE
201: YSHYGAAVAT AAETHSTPSS SVVGSSRTVR LFGVNLECQM DENDGDDSVA VATTVESPDG YYGQNII

Arabidopsis Description

AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BF34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.