Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400031863 | Potato | nucleus | 92.52 | 76.11 |
| Zm00001d035982_P001 | Maize | nucleus | 16.47 | 62.5 |
| Solyc08g013700.1.1 | Tomato | nucleus | 48.2 | 54.76 |
| Solyc08g013690.1.1 | Tomato | nucleus | 50.3 | 51.85 |
| Zm00001d048815_P001 | Maize | nucleus | 31.14 | 44.83 |
| GSMUA_Achr4P26430_001 | Banana | nucleus | 32.63 | 43.6 |
| GSMUA_Achr4P30170_001 | Banana | nucleus | 31.74 | 42.57 |
| Zm00001d010077_P001 | Maize | nucleus | 32.34 | 41.7 |
| Zm00001d029749_P001 | Maize | nucleus | 32.63 | 39.93 |
| Os03t0120900-01 | Rice | nucleus | 36.83 | 39.55 |
| EER92015 | Sorghum | nucleus | 32.34 | 39.42 |
| TraesCS7A01G020800.1 | Wheat | nucleus | 23.35 | 39.39 |
| TraesCS5A01G516600.1 | Wheat | nucleus | 37.13 | 39.12 |
| TraesCS7A01G461000.1 | Wheat | nucleus | 22.75 | 38.97 |
| Os04t0581400-01 | Rice | nucleus | 34.13 | 38.91 |
| TraesCS4B01G348500.1 | Wheat | nucleus | 37.13 | 38.87 |
| Os06t0107800-02 | Rice | nucleus | 23.05 | 38.69 |
| Zm00001d047359_P001 | Maize | nucleus | 32.04 | 38.63 |
| GSMUA_Achr5P12850_001 | Banana | nucleus | 24.25 | 38.39 |
| TraesCS7D01G448900.1 | Wheat | nucleus | 22.46 | 38.27 |
| Zm00001d027409_P001 | Maize | nucleus | 37.43 | 38.23 |
| TraesCS1B01G215000.1 | Wheat | nucleus | 31.44 | 38.18 |
| TraesCS1A01G200500.1 | Wheat | nucleus | 31.74 | 38.13 |
| HORVU0Hr1G022200.1 | Barley | nucleus | 22.75 | 38.0 |
| HORVU7Hr1G046950.1 | Barley | nucleus | 31.14 | 37.96 |
| OQU93364 | Sorghum | nucleus | 37.43 | 37.88 |
| TraesCS7B01G362500.1 | Wheat | nucleus | 22.16 | 37.76 |
| GSMUA_Achr7P04630_001 | Banana | nucleus | 23.05 | 37.38 |
| GSMUA_Achr1P03600_001 | Banana | nucleus | 36.83 | 37.27 |
| KXG19112 | Sorghum | nucleus | 22.75 | 37.07 |
| Zm00001d035903_P001 | Maize | nucleus | 24.85 | 37.05 |
| TraesCS4A01G472700.1 | Wheat | nucleus | 23.95 | 36.87 |
| HORVU1Hr1G051780.2 | Barley | nucleus | 32.34 | 36.86 |
| TraesCS1D01G203900.1 | Wheat | nucleus | 32.04 | 36.77 |
| Zm00001d024103_P001 | Maize | nucleus | 24.55 | 36.61 |
| TraesCS7D01G017000.1 | Wheat | nucleus | 23.65 | 36.41 |
| TraesCS7A01G020700.1 | Wheat | nucleus | 23.35 | 36.28 |
| HORVU7Hr1G002230.1 | Barley | nucleus | 23.65 | 35.91 |
| Os10t0537100-00 | Rice | nucleus | 32.93 | 35.26 |
| TraesCS2A01G394700.1 | Wheat | nucleus | 42.22 | 34.9 |
| HORVU4Hr1G084950.3 | Barley | nucleus | 35.63 | 34.9 |
| TraesCS2B01G412700.1 | Wheat | nucleus | 42.52 | 34.72 |
| HORVU6Hr1G066190.2 | Barley | nucleus | 42.52 | 34.72 |
| VIT_02s0025g03000.t01 | Wine grape | nucleus | 47.31 | 34.65 |
| TraesCS6B01G286900.1 | Wheat | nucleus | 42.22 | 34.47 |
| TraesCS2D01G392400.1 | Wheat | nucleus | 42.22 | 34.47 |
| Os02t0683500-01 | Rice | nucleus | 42.52 | 34.47 |
| TraesCS6D01G240600.1 | Wheat | nucleus | 42.52 | 34.3 |
| TraesCS6A01G259600.1 | Wheat | nucleus | 42.52 | 34.3 |
| GSMUA_AchrUn_... | Banana | cytosol | 24.55 | 34.02 |
| GSMUA_Achr2P00400_001 | Banana | nucleus | 28.74 | 33.33 |
| Zm00001d002562_P001 | Maize | nucleus | 40.72 | 33.25 |
| GSMUA_Achr4P24970_001 | Banana | nucleus | 23.35 | 33.19 |
| EES12712 | Sorghum | nucleus | 41.62 | 33.1 |
| GSMUA_Achr5P10220_001 | Banana | nucleus | 26.95 | 33.09 |
| Zm00001d026005_P001 | Maize | nucleus | 39.52 | 32.67 |
| Zm00001d017618_P001 | Maize | nucleus | 41.02 | 32.46 |
| KXG19111 | Sorghum | nucleus | 23.05 | 32.35 |
| GSMUA_Achr2P10230_001 | Banana | nucleus | 29.34 | 32.24 |
| GSMUA_Achr4P12210_001 | Banana | nucleus | 21.56 | 32.14 |
| EES07445 | Sorghum | nucleus | 41.32 | 31.8 |
| Zm00001d051471_P001 | Maize | nucleus | 39.82 | 31.67 |
| GSMUA_Achr9P18780_001 | Banana | nucleus | 26.95 | 31.47 |
| KRH68988 | Soybean | nucleus | 38.92 | 30.95 |
| KRG97268 | Soybean | nucleus | 37.72 | 30.51 |
| Zm00001d024545_P001 | Maize | nucleus | 22.46 | 30.12 |
| EES13386 | Sorghum | nucleus | 22.75 | 30.04 |
| VIT_15s0048g02370.t01 | Wine grape | nucleus | 41.32 | 29.93 |
| GSMUA_Achr5P20340_001 | Banana | nucleus | 29.94 | 29.67 |
| Solyc10g083210.1.1 | Tomato | nucleus | 26.05 | 28.25 |
| Os08t0157700-00 | Rice | nucleus | 23.95 | 27.87 |
| Solyc09g010230.1.1 | Tomato | nucleus | 28.14 | 27.25 |
| KRH47753 | Soybean | nucleus | 39.82 | 26.6 |
| Solyc04g007000.1.1 | Tomato | nucleus | 27.25 | 24.46 |
| Solyc05g009790.1.1 | Tomato | nucleus | 28.14 | 23.8 |
| KRH06334 | Soybean | nucleus | 39.82 | 22.85 |
| Solyc12g098460.1.1 | Tomato | nucleus | 13.17 | 21.05 |
| Solyc03g083110.1.1 | Tomato | nucleus | 16.47 | 16.42 |
Protein Annotations
| MapMan:15.5.5.3 | Gene3D:2.40.330.10 | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR003340 | InterPro:IPR015300 | UniProt:K4CPY4 | PFAM:PF02362 | PFscan:PS50863 |
| PANTHER:PTHR31140 | PANTHER:PTHR31140:SF4 | SMART:SM01019 | SUPFAM:SSF101936 | EnsemblPlantsGene:Solyc08g083400.2 | EnsemblPlants:Solyc08g083400.2.1 |
| UniParc:UPI000276ACFD | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr8:+:65860330..65861661
Molecular Weight (calculated)
37828.8 Da
IEP (calculated)
7.437
GRAVY (calculated)
-0.792
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFFSDGRGF NDQGPFSHPD FSHQQRSTTN SSDMADEVGE SNTIEREHMF DKVVTPSDVG KLNRLVIPKQ HAEKYFPLDS STNEKGLLLN FEDTNGKPWR
101: FRYSYWNSSQ SYVMTKGWSR FVKEKKLDAG DIVSFQRGVG ELGKDRLFID WKRRPNAPDH LHFMTNHHLH NNLYRSNIQY PAAAWDRPLF LQPPDQSHLQ
201: YSLEPAPGSM SQQQQSHGSS PNYYYDTCNF INSRTTVVNG NPCPSGSVVY LRSGSAQVPQ QAGLMQLRGH SNSSTSGRVV EPVVFDSVPV VQGKAAAKRF
301: RTFNDYDTNR PAATEEESFD KGKASMSLNL DLDI
101: FRYSYWNSSQ SYVMTKGWSR FVKEKKLDAG DIVSFQRGVG ELGKDRLFID WKRRPNAPDH LHFMTNHHLH NNLYRSNIQY PAAAWDRPLF LQPPDQSHLQ
201: YSLEPAPGSM SQQQQSHGSS PNYYYDTCNF INSRTTVVNG NPCPSGSVVY LRSGSAQVPQ QAGLMQLRGH SNSSTSGRVV EPVVFDSVPV VQGKAAAKRF
301: RTFNDYDTNR PAATEEESFD KGKASMSLNL DLDI
001: MMTDLSLTRD EDEEEAKPLA EEEGAREVAD REHMFDKVVT PSDVGKLNRL VIPKQHAERF FPLDSSSNEK GLLLNFEDLT GKSWRFRYSY WNSSQSYVMT
101: KGWSRFVKDK KLDAGDIVSF QRCVGDSGRD SRLFIDWRRR PKVPDHPHFA AGAMFPRFYS FPSTNYSLYN HQQQRHHHSG GGYNYHQIPR EFGYGYFVRS
201: VDQRNNPAAA VADPLVIESV PVMMHGRANQ ELVGTAGKRL RLFGVDMECG ESGMTNSTEE ESSSSGGSLP RGGGGGASSS SFFQLRLGSS SEDDHFTKKG
301: KSSLSFDLDQ
101: KGWSRFVKDK KLDAGDIVSF QRCVGDSGRD SRLFIDWRRR PKVPDHPHFA AGAMFPRFYS FPSTNYSLYN HQQQRHHHSG GGYNYHQIPR EFGYGYFVRS
201: VDQRNNPAAA VADPLVIESV PVMMHGRANQ ELVGTAGKRL RLFGVDMECG ESGMTNSTEE ESSSSGGSLP RGGGGGASSS SFFQLRLGSS SEDDHFTKKG
301: KSSLSFDLDQ
Arabidopsis Description
NGA1B3 domain-containing transcription factor NGA1 [Source:UniProtKB/Swiss-Prot;Acc:O82799]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.