Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d035982_P001 | Maize | nucleus | 16.02 | 61.36 |
| CDY67348 | Canola | nucleus | 19.88 | 44.67 |
| GSMUA_Achr4P26430_001 | Banana | nucleus | 32.34 | 43.6 |
| GSMUA_Achr5P12850_001 | Banana | nucleus | 27.0 | 43.13 |
| GSMUA_Achr9P02600_001 | Banana | nucleus | 24.04 | 41.97 |
| Zm00001d029749_P001 | Maize | nucleus | 33.53 | 41.39 |
| EER92015 | Sorghum | nucleus | 33.53 | 41.24 |
| GSMUA_Achr3P19210_001 | Banana | nucleus | 24.33 | 40.8 |
| Zm00001d048815_P001 | Maize | nucleus | 27.89 | 40.52 |
| Zm00001d047359_P001 | Maize | nucleus | 33.23 | 40.43 |
| GSMUA_Achr4P30170_001 | Banana | nucleus | 29.67 | 40.16 |
| CDY43060 | Canola | cytosol | 18.69 | 38.65 |
| TraesCS1B01G215000.1 | Wheat | nucleus | 31.45 | 38.55 |
| GSMUA_Achr4P24970_001 | Banana | nucleus | 26.71 | 38.3 |
| Zm00001d010077_P001 | Maize | nucleus | 29.38 | 38.22 |
| TraesCS1A01G200500.1 | Wheat | nucleus | 31.16 | 37.77 |
| TraesCS1D01G203900.1 | Wheat | nucleus | 31.75 | 36.77 |
| Os03t0120900-01 | Rice | nucleus | 33.83 | 36.66 |
| TraesCS5A01G516600.1 | Wheat | nucleus | 34.42 | 36.59 |
| HORVU1Hr1G051780.2 | Barley | nucleus | 31.75 | 36.52 |
| CDX67872 | Canola | nucleus | 30.86 | 36.49 |
| Bra003482.1-P | Field mustard | nucleus | 30.86 | 36.36 |
| GSMUA_Achr1P03600_001 | Banana | nucleus | 35.61 | 36.36 |
| TraesCS4B01G348500.1 | Wheat | nucleus | 34.42 | 36.36 |
| Os10t0537100-00 | Rice | nucleus | 33.53 | 36.22 |
| GSMUA_Achr5P10220_001 | Banana | nucleus | 29.08 | 36.03 |
| GSMUA_Achr6P35600_001 | Banana | nucleus | 25.82 | 35.95 |
| Bra007646.1-P | Field mustard | nucleus | 30.86 | 35.62 |
| CDX76605 | Canola | nucleus | 30.86 | 35.62 |
| CDY11388 | Canola | nucleus | 30.86 | 35.62 |
| AT3G61970.1 | Thale cress | nucleus | 31.45 | 35.45 |
| Solyc08g013700.1.1 | Tomato | nucleus | 30.86 | 35.37 |
| CDY69432 | Canola | nucleus | 29.08 | 35.25 |
| Bra040478.1-P | Field mustard | nucleus | 30.56 | 35.15 |
| PGSC0003DMT400015010 | Potato | nucleus | 31.16 | 35.0 |
| OQU93364 | Sorghum | nucleus | 34.12 | 34.85 |
| CDY27515 | Canola | nucleus | 31.16 | 34.54 |
| CDY48008 | Canola | nucleus | 31.16 | 34.54 |
| PGSC0003DMT400015011 | Potato | nucleus | 32.05 | 34.5 |
| GSMUA_Achr7P04630_001 | Banana | nucleus | 21.07 | 34.47 |
| GSMUA_Achr6P13140_001 | Banana | nucleus | 25.22 | 34.41 |
| Bra004501.1-P | Field mustard | nucleus | 30.27 | 34.34 |
| CDX80053 | Canola | nucleus | 30.27 | 34.34 |
| HORVU7Hr1G046950.1 | Barley | nucleus | 27.89 | 34.31 |
| Zm00001d027409_P001 | Maize | nucleus | 33.23 | 34.25 |
| Os04t0581400-01 | Rice | nucleus | 29.67 | 34.13 |
| CDY41564 | Canola | nucleus | 29.97 | 34.01 |
| GSMUA_Achr9P08980_001 | Banana | nucleus | 16.32 | 33.95 |
| AT2G46870.1 | Thale cress | nucleus | 30.86 | 33.55 |
| CDX83351 | Canola | nucleus | 30.56 | 33.44 |
| GSMUA_Achr11P... | Banana | nucleus | 18.1 | 32.97 |
| Bra000434.1-P | Field mustard | nucleus | 30.27 | 32.9 |
| HORVU4Hr1G084950.3 | Barley | nucleus | 33.23 | 32.84 |
| Solyc08g013690.1.1 | Tomato | nucleus | 31.45 | 32.72 |
| CDY58763 | Canola | nucleus | 30.56 | 32.39 |
| CDY50908 | Canola | nucleus | 30.27 | 32.38 |
| Bra014415.1-P | Field mustard | nucleus | 30.56 | 32.19 |
| CDY58764 | Canola | nucleus | 30.56 | 32.19 |
| GSMUA_AchrUn_... | Banana | cytosol | 22.85 | 31.95 |
| GSMUA_Achr4P12210_001 | Banana | nucleus | 21.07 | 31.7 |
| GSMUA_Achr2P00400_001 | Banana | nucleus | 27.0 | 31.6 |
| GSMUA_Achr9P18780_001 | Banana | nucleus | 26.71 | 31.47 |
| TraesCS2A01G394700.1 | Wheat | nucleus | 37.39 | 31.19 |
| GSMUA_Achr2P10230_001 | Banana | nucleus | 27.89 | 30.92 |
| TraesCS2B01G412700.1 | Wheat | nucleus | 37.39 | 30.81 |
| Zm00001d002562_P001 | Maize | nucleus | 37.39 | 30.81 |
| CDY15208 | Canola | nucleus | 29.38 | 30.75 |
| TraesCS2D01G392400.1 | Wheat | nucleus | 37.09 | 30.56 |
| Zm00001d026005_P001 | Maize | nucleus | 36.5 | 30.45 |
| GSMUA_Achr1P21250_001 | Banana | nucleus | 26.41 | 30.27 |
| Solyc08g083400.2.1 | Tomato | nucleus | 29.67 | 29.94 |
| Os02t0683500-01 | Rice | nucleus | 36.5 | 29.85 |
| EES12712 | Sorghum | nucleus | 37.09 | 29.76 |
| CDX90001 | Canola | nucleus | 30.27 | 29.65 |
| Zm00001d017618_P001 | Maize | nucleus | 36.5 | 29.15 |
| TraesCS6B01G286900.1 | Wheat | nucleus | 35.31 | 29.1 |
| CDY07140 | Canola | nucleus | 26.41 | 29.09 |
| Bra033294.1-P | Field mustard | nucleus | 29.67 | 29.07 |
| Zm00001d051471_P001 | Maize | nucleus | 36.2 | 29.05 |
| GSMUA_Achr5P09950_001 | Banana | nucleus | 27.6 | 28.88 |
| HORVU6Hr1G066190.2 | Barley | nucleus | 35.01 | 28.85 |
| AT4G01500.1 | Thale cress | nucleus | 28.49 | 28.83 |
| GSMUA_Achr6P01420_001 | Banana | nucleus | 27.0 | 28.8 |
| AT1G01030.1 | Thale cress | nucleus | 30.56 | 28.77 |
| TraesCS6A01G259600.1 | Wheat | nucleus | 35.31 | 28.74 |
| TraesCS6D01G240600.1 | Wheat | nucleus | 35.31 | 28.74 |
| Bra037417.1-P | Field mustard | nucleus | 26.41 | 28.71 |
| CDY49614 | Canola | nucleus | 26.41 | 28.71 |
| EES07445 | Sorghum | nucleus | 36.8 | 28.57 |
| Bra008552.1-P | Field mustard | nucleus | 28.49 | 28.4 |
| CDX97251 | Canola | nucleus | 28.49 | 28.32 |
| Bra030497.1-P | Field mustard | nucleus | 29.38 | 27.97 |
| GSMUA_Achr1P05400_001 | Banana | nucleus | 24.33 | 27.52 |
| PGSC0003DMT400031863 | Potato | nucleus | 32.05 | 26.6 |
| GSMUA_Achr2P22560_001 | Banana | nucleus | 24.33 | 26.45 |
| KRH68988 | Soybean | nucleus | 32.94 | 26.43 |
| KRG97268 | Soybean | nucleus | 31.45 | 25.67 |
| VIT_02s0025g03000.t01 | Wine grape | nucleus | 34.12 | 25.22 |
| VIT_15s0048g02370.t01 | Wine grape | nucleus | 34.12 | 24.95 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.0 | 24.33 |
| KRH47753 | Soybean | nucleus | 34.42 | 23.2 |
| GSMUA_Achr6P09880_001 | Banana | nucleus | 19.58 | 22.84 |
| GSMUA_Achr4P06710_001 | Banana | nucleus | 23.44 | 22.57 |
| GSMUA_Achr3P29380_001 | Banana | nucleus | 16.91 | 21.67 |
| GSMUA_Achr3P21100_001 | Banana | nucleus | 26.41 | 21.6 |
| GSMUA_Achr6P18320_001 | Banana | nucleus | 21.66 | 21.47 |
| GSMUA_Achr4P03670_001 | Banana | nucleus | 18.4 | 21.09 |
| GSMUA_Achr10P... | Banana | nucleus | 17.8 | 20.55 |
| KRH06334 | Soybean | nucleus | 34.72 | 20.1 |
| GSMUA_Achr9P21470_001 | Banana | nucleus | 17.8 | 19.35 |
| GSMUA_Achr8P14650_001 | Banana | nucleus | 21.66 | 17.63 |
| GSMUA_Achr11P... | Banana | nucleus | 15.13 | 15.18 |
Protein Annotations
| MapMan:15.5.5.3 | Gene3D:2.40.330.10 | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr5G20340_001 | EnsemblPlants:GSMUA_Achr5P20340_001 | EnsemblPlants:GSMUA_Achr5T20340_001 | InterPro:IPR003340 | InterPro:IPR015300 |
| UniProt:M0T063 | PFAM:PF02362 | PFscan:PS50863 | PANTHER:PTHR31140 | PANTHER:PTHR31140:SF4 | SMART:SM01019 |
| SUPFAM:SSF101936 | UniParc:UPI000296D1D1 | SEG:seg | : | : | : |
Description
Putative RAV-like 1 protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G20340_001]
Coordinates
chr5:-:22089760..22091023
Molecular Weight (calculated)
37098.1 Da
IEP (calculated)
8.834
GRAVY (calculated)
-0.590
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MYYCTTKISP SFCKGDLKMA FAHGRDMFDF TEQEEAWKHA PFLLSSSSTS SPSSSSAPFR WNDGSSSSSR RGDDSFIEKE HMFDKVVTPS DVGKLNRLVI
101: PKQHAEKYFP LDAEAHGKGL LLSFEDRNGE SWRFRYSYWS SSQSYVMTKG WSRFVKEKRL VSGDTVSFGR GVGESGRDLL YIDWKRRPEN HGATRASRIS
201: FHGASFAQSA GPWGGHLFMP RPPPPPPATV YDHHRLGYGY NLQPGGGGGS PMAHDSVSVV HSQATAKNVR LFGVNLVCTG TESKANGSNQ GASFSCLRSQ
301: EASTLPLLQF QHSSAESSLV SSSSTSKEQH SSLDLDL
101: PKQHAEKYFP LDAEAHGKGL LLSFEDRNGE SWRFRYSYWS SSQSYVMTKG WSRFVKEKRL VSGDTVSFGR GVGESGRDLL YIDWKRRPEN HGATRASRIS
201: FHGASFAQSA GPWGGHLFMP RPPPPPPATV YDHHRLGYGY NLQPGGGGGS PMAHDSVSVV HSQATAKNVR LFGVNLVCTG TESKANGSNQ GASFSCLRSQ
301: EASTLPLLQF QHSSAESSLV SSSSTSKEQH SSLDLDL
001: MDLSLAPTTT TSSDQEQDRD QELTSNIGAS SSSGPSGNNN NLPMMMIPPP EKEHMFDKVV TPSDVGKLNR LVIPKQHAER YFPLDSSNNQ NGTLLNFQDR
101: NGKMWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDIVS FQRGIGDESE RSKLYIDWRH RPDMSLVQAH QFEYNSVPIH RGLNIGNHQR SYYNTQRQEF
201: VGYGYGNLAG RCYYTGSPLD HRNIVGSEPL VIDSVPVVPG RLTPVMLPPL PPPPSTAGKR LRLFGVNMEC GNDYNQQEES WLVPRGEIGA SSSSSSALRL
301: NLSTDHDDDN DDGDDGDDDQ FAKKGKSSLS LNFNP
101: NGKMWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDIVS FQRGIGDESE RSKLYIDWRH RPDMSLVQAH QFEYNSVPIH RGLNIGNHQR SYYNTQRQEF
201: VGYGYGNLAG RCYYTGSPLD HRNIVGSEPL VIDSVPVVPG RLTPVMLPPL PPPPSTAGKR LRLFGVNMEC GNDYNQQEES WLVPRGEIGA SSSSSSALRL
301: NLSTDHDDDN DDGDDGDDDQ FAKKGKSSLS LNFNP
Arabidopsis Description
NGA3NGA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3T3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.