Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49614 | Canola | nucleus | 95.75 | 94.52 |
| CDY67348 | Canola | nucleus | 33.66 | 68.67 |
| CDX97251 | Canola | nucleus | 71.9 | 64.9 |
| AT4G01500.1 | Thale cress | nucleus | 66.01 | 60.66 |
| CDY43060 | Canola | cytosol | 30.39 | 57.06 |
| Zm00001d035982_P001 | Maize | nucleus | 14.71 | 51.14 |
| TraesCS7A01G461000.1 | Wheat | nucleus | 23.86 | 37.44 |
| TraesCS7D01G448900.1 | Wheat | nucleus | 23.86 | 37.24 |
| Os06t0107800-02 | Rice | nucleus | 24.18 | 37.19 |
| TraesCS7B01G362500.1 | Wheat | nucleus | 23.53 | 36.73 |
| HORVU0Hr1G022200.1 | Barley | nucleus | 23.86 | 36.5 |
| TraesCS7A01G020800.1 | Wheat | nucleus | 23.53 | 36.36 |
| TraesCS7A01G020700.1 | Wheat | nucleus | 23.86 | 33.95 |
| TraesCS4A01G472700.1 | Wheat | nucleus | 23.86 | 33.64 |
| HORVU7Hr1G002230.1 | Barley | nucleus | 23.86 | 33.18 |
| TraesCS7D01G017000.1 | Wheat | nucleus | 23.53 | 33.18 |
| KXG19112 | Sorghum | nucleus | 22.22 | 33.17 |
| GSMUA_Achr4P30170_001 | Banana | nucleus | 25.49 | 31.33 |
| Zm00001d048815_P001 | Maize | nucleus | 23.53 | 31.03 |
| CDY69432 | Canola | nucleus | 27.78 | 30.58 |
| CDX67872 | Canola | nucleus | 28.43 | 30.53 |
| Zm00001d024545_P001 | Maize | nucleus | 24.84 | 30.52 |
| EES13386 | Sorghum | nucleus | 25.16 | 30.43 |
| GSMUA_Achr4P26430_001 | Banana | nucleus | 24.84 | 30.4 |
| CDY08512 | Canola | nucleus | 24.51 | 30.24 |
| Zm00001d035903_P001 | Maize | nucleus | 21.9 | 29.91 |
| KXG19111 | Sorghum | nucleus | 23.2 | 29.83 |
| TraesCS1B01G215000.1 | Wheat | nucleus | 26.8 | 29.82 |
| CDX76605 | Canola | nucleus | 28.43 | 29.79 |
| CDY11388 | Canola | nucleus | 28.43 | 29.79 |
| Zm00001d010077_P001 | Maize | nucleus | 25.16 | 29.73 |
| TraesCS1A01G200500.1 | Wheat | nucleus | 26.8 | 29.5 |
| Zm00001d024103_P001 | Maize | nucleus | 21.57 | 29.46 |
| CDX84162 | Canola | nucleus | 23.2 | 29.22 |
| CDY43751 | Canola | nucleus | 23.2 | 29.22 |
| CDY01036 | Canola | nucleus | 24.51 | 29.18 |
| GSMUA_Achr7P04630_001 | Banana | nucleus | 19.61 | 29.13 |
| CDX75073 | Canola | nucleus | 23.53 | 29.03 |
| CDY62470 | Canola | nucleus | 21.57 | 28.95 |
| GSMUA_Achr5P12850_001 | Banana | nucleus | 19.93 | 28.91 |
| CDX73868 | Canola | nucleus | 22.22 | 28.81 |
| CDX80053 | Canola | nucleus | 27.78 | 28.62 |
| CDY41564 | Canola | nucleus | 27.78 | 28.62 |
| GSMUA_Achr4P12210_001 | Banana | nucleus | 20.91 | 28.57 |
| TraesCS1D01G203900.1 | Wheat | nucleus | 26.8 | 28.18 |
| EER92015 | Sorghum | nucleus | 25.16 | 28.1 |
| HORVU1Hr1G051780.2 | Barley | nucleus | 26.8 | 27.99 |
| CDY27515 | Canola | nucleus | 27.78 | 27.96 |
| CDY48008 | Canola | nucleus | 27.78 | 27.96 |
| CDX83351 | Canola | nucleus | 28.1 | 27.92 |
| Zm00001d029749_P001 | Maize | nucleus | 24.84 | 27.84 |
| CDY15208 | Canola | nucleus | 29.09 | 27.64 |
| CDY50908 | Canola | nucleus | 28.43 | 27.62 |
| CDY47260 | Canola | nucleus | 23.86 | 27.34 |
| Zm00001d047359_P001 | Maize | nucleus | 24.51 | 27.08 |
| CDY58763 | Canola | nucleus | 28.1 | 27.04 |
| CDX90001 | Canola | nucleus | 30.39 | 27.03 |
| Os03t0120900-01 | Rice | nucleus | 27.45 | 27.01 |
| CDY58764 | Canola | nucleus | 28.1 | 26.88 |
| GSMUA_Achr5P20340_001 | Banana | nucleus | 29.09 | 26.41 |
| TraesCS5A01G516600.1 | Wheat | nucleus | 27.12 | 26.18 |
| OQU93364 | Sorghum | nucleus | 28.1 | 26.06 |
| TraesCS4B01G348500.1 | Wheat | nucleus | 27.12 | 26.02 |
| HORVU7Hr1G046950.1 | Barley | nucleus | 23.2 | 25.91 |
| Zm00001d027409_P001 | Maize | nucleus | 27.12 | 25.38 |
| Os04t0581400-01 | Rice | nucleus | 24.18 | 25.26 |
| GSMUA_Achr4P24970_001 | Banana | nucleus | 19.28 | 25.11 |
| Os08t0157700-00 | Rice | nucleus | 23.53 | 25.09 |
| Os10t0537100-00 | Rice | nucleus | 25.49 | 25.0 |
| GSMUA_Achr1P03600_001 | Banana | nucleus | 26.8 | 24.85 |
| HORVU4Hr1G084950.3 | Barley | nucleus | 27.45 | 24.63 |
| GSMUA_AchrUn_... | Banana | cytosol | 19.28 | 24.48 |
| CDX80996 | Canola | nucleus | 21.9 | 24.36 |
| CDX97996 | Canola | nucleus | 25.16 | 23.69 |
| CDY61361 | Canola | nucleus | 25.16 | 23.55 |
| CDY58354 | Canola | nucleus | 24.84 | 23.31 |
| CDY72302 | Canola | nucleus | 24.84 | 23.31 |
| CDX81561 | Canola | nucleus | 25.82 | 23.03 |
| CDY40973 | Canola | nucleus | 23.53 | 22.86 |
| CDY45849 | Canola | nucleus, plastid | 26.14 | 22.86 |
| GSMUA_Achr2P10230_001 | Banana | nucleus | 22.22 | 22.37 |
| CDX99755 | Canola | nucleus | 24.84 | 22.35 |
| GSMUA_Achr5P10220_001 | Banana | nucleus | 19.61 | 22.06 |
| CDY24391 | Canola | nucleus | 23.86 | 21.6 |
| GSMUA_Achr9P18780_001 | Banana | nucleus | 19.93 | 21.33 |
| GSMUA_Achr2P00400_001 | Banana | nucleus | 19.93 | 21.18 |
| Zm00001d026005_P001 | Maize | nucleus | 27.78 | 21.04 |
| Zm00001d002562_P001 | Maize | nucleus | 28.1 | 21.03 |
| CDY36099 | Canola | nucleus | 23.86 | 20.86 |
| TraesCS2A01G394700.1 | Wheat | nucleus | 27.45 | 20.79 |
| CDX84999 | Canola | nucleus | 23.86 | 20.62 |
| TraesCS2B01G412700.1 | Wheat | nucleus | 27.45 | 20.54 |
| TraesCS2D01G392400.1 | Wheat | nucleus | 27.45 | 20.54 |
| CDY16133 | Canola | nucleus | 23.86 | 20.39 |
| EES12712 | Sorghum | nucleus | 27.78 | 20.24 |
| TraesCS6B01G286900.1 | Wheat | nucleus | 26.47 | 19.8 |
| Os02t0683500-01 | Rice | nucleus | 26.47 | 19.66 |
| HORVU6Hr1G066190.2 | Barley | nucleus | 26.14 | 19.56 |
| TraesCS6A01G259600.1 | Wheat | nucleus | 26.14 | 19.32 |
| TraesCS6D01G240600.1 | Wheat | nucleus | 26.14 | 19.32 |
| CDX98911 | Canola | nucleus | 15.03 | 19.25 |
| CDY70080 | Canola | nucleus | 15.03 | 19.25 |
| Zm00001d051471_P001 | Maize | nucleus | 26.14 | 19.05 |
| Zm00001d017618_P001 | Maize | nucleus | 25.82 | 18.72 |
| EES07445 | Sorghum | nucleus | 26.14 | 18.43 |
| CDX83547 | Canola | nucleus | 18.63 | 17.59 |
| CDY29599 | Canola | nucleus | 18.63 | 17.54 |
| CDY37109 | Canola | nucleus | 18.95 | 17.42 |
| CDY22814 | Canola | nucleus | 18.95 | 17.21 |
| CDY29620 | Canola | nucleus | 18.95 | 16.86 |
| CDY37130 | Canola | nucleus | 18.63 | 16.81 |
| CDY46564 | Canola | nucleus | 18.63 | 16.81 |
| CDY51249 | Canola | nucleus | 18.63 | 16.81 |
| CDY35575 | Canola | nucleus | 18.95 | 16.81 |
| CDY65812 | Canola | nucleus | 15.36 | 16.73 |
| CDY22826 | Canola | nucleus | 17.97 | 16.27 |
| CDY25209 | Canola | nucleus | 17.97 | 15.49 |
| CDY37108 | Canola | nucleus, plastid | 16.99 | 15.16 |
| CDY22801 | Canola | nucleus | 16.99 | 14.94 |
Protein Annotations
| EnsemblPlants:CDY07140 | EnsemblPlantsGene:GSBRNA2T00123491001 | Gene3D:2.40.330.10 | GO:A0A078EYG8 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | InterPro:IPR003340 | InterPro:IPR015300 |
| PANTHER:PTHR31140 | PANTHER:PTHR31140:SF4 | PFAM:PF02362 | PFscan:PS50863 | ProteinID:CDY07140 | ProteinID:CDY07140.1 |
| SEG:seg | SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI0004EBF728 | MapMan:15.5.5.3 | : |
Description
BnaCnng01550D
Coordinates
chrLK031975:-:458762..460340
Molecular Weight (calculated)
35132.9 Da
IEP (calculated)
7.326
GRAVY (calculated)
-0.841
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MASGSGNNNN NFNMAMGEHM FDKVLTTSDV GKLNRLVIPK QHAENYFPLE EIQNGTMLDF QDRNGKMWKF RYLYWSSSQS YVMTKGWVRF VKDKNLESGD
101: TISFHRSYVL DDTEPGKRIK KLYVDWRHRA DRNLVHNINH HHHYPLFMPP TYPSAGYYPL SGYSMPHYQR LPPFYHNQFQ ERDFSGYGYG GPDYAGSPWG
201: HHHHYQYGRS EPLVYNSYPV YPTTGVPSSS AILPPHQPPQ EGTAKKLRLF GVDVEESSSS GEARGEMAVA GYSSSSPVVI RDEESSSAMQ LSEDEEYKRK
301: GKSIDF
101: TISFHRSYVL DDTEPGKRIK KLYVDWRHRA DRNLVHNINH HHHYPLFMPP TYPSAGYYPL SGYSMPHYQR LPPFYHNQFQ ERDFSGYGYG GPDYAGSPWG
201: HHHHYQYGRS EPLVYNSYPV YPTTGVPSSS AILPPHQPPQ EGTAKKLRLF GVDVEESSSS GEARGEMAVA GYSSSSPVVI RDEESSSAMQ LSEDEEYKRK
301: GKSIDF
001: MNISTMNLDQ ELAEIRASSS DHTNYFYSSE RREHMFDKVL TPSDVGKLNR LVIPKQHAEN FFPLEDNQNG TVLDFQDKNG KMWRFRYSYW NSSQSYVMTK
101: GWSRFVKEKK LFAGDTVSFY RGYIPDDNAQ PERRRKIMFI DWRPRAEINF VHNINNHNFV FGSPTYPTAR FYPVTPEYSM PYRSFPPFYQ NQFQEREYLG
201: YGYGRVVNGN GVRYYAGSPL DQHHQWNLGR SEPLVYDSVP VFPAGRVPPS APPQPSTTKK LRLFGVDVEE SSSSGDTRGE MGVAGYSSSS PVVIRDDDQS
301: FWRSPRGEMA SSSSAMQLSD DEEYKRKGKS LEL
101: GWSRFVKEKK LFAGDTVSFY RGYIPDDNAQ PERRRKIMFI DWRPRAEINF VHNINNHNFV FGSPTYPTAR FYPVTPEYSM PYRSFPPFYQ NQFQEREYLG
201: YGYGRVVNGN GVRYYAGSPL DQHHQWNLGR SEPLVYDSVP VFPAGRVPPS APPQPSTTKK LRLFGVDVEE SSSSGDTRGE MGVAGYSSSS PVVIRDDDQS
301: FWRSPRGEMA SSSSAMQLSD DEEYKRKGKS LEL
Arabidopsis Description
NGA4NGA4 [Source:UniProtKB/TrEMBL;Acc:A0A178V2Z9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.