Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22801 | Canola | nucleus | 89.09 | 86.78 |
| CDY37108 | Canola | nucleus, plastid | 81.12 | 80.17 |
| CDY22814 | Canola | nucleus | 74.34 | 74.78 |
| AT1G51120.1 | Thale cress | nucleus | 70.5 | 67.9 |
| AT1G50680.1 | Thale cress | nucleus | 66.37 | 66.77 |
| CDY37109 | Canola | nucleus | 64.9 | 66.07 |
| CDY29620 | Canola | nucleus | 66.67 | 65.7 |
| CDY35575 | Canola | nucleus | 66.08 | 64.93 |
| CDY51249 | Canola | nucleus | 64.9 | 64.9 |
| CDY46564 | Canola | nucleus | 64.9 | 64.9 |
| CDY22826 | Canola | nucleus | 63.13 | 63.31 |
| CDY29599 | Canola | nucleus | 59.59 | 62.15 |
| CDY65812 | Canola | nucleus | 51.03 | 61.57 |
| CDY25209 | Canola | nucleus | 63.13 | 60.28 |
| KRG93082 | Soybean | nucleus | 45.72 | 48.59 |
| VIT_11s0037g00010.t01 | Wine grape | nucleus | 45.43 | 43.14 |
| PGSC0003DMT400085602 | Potato | nucleus | 16.22 | 42.97 |
| Solyc03g083110.1.1 | Tomato | nucleus | 41.59 | 42.09 |
| CDY40973 | Canola | nucleus | 29.2 | 31.43 |
| CDY72302 | Canola | nucleus | 30.09 | 31.29 |
| CDY58354 | Canola | nucleus | 29.79 | 30.98 |
| CDX97996 | Canola | nucleus | 29.5 | 30.77 |
| CDY61361 | Canola | nucleus | 29.5 | 30.58 |
| PGSC0003DMT400092316 | Potato | nucleus | 11.8 | 30.08 |
| CDY24391 | Canola | nucleus | 29.79 | 29.88 |
| Solyc12g098460.1.1 | Tomato | nucleus | 18.29 | 29.67 |
| CDX81561 | Canola | nucleus | 29.79 | 29.45 |
| CDY67348 | Canola | nucleus | 12.98 | 29.33 |
| CDY45849 | Canola | nucleus, plastid | 30.09 | 29.14 |
| CDX99755 | Canola | nucleus | 29.2 | 29.12 |
| CDX84999 | Canola | nucleus | 30.38 | 29.1 |
| GSMUA_Achr8P14650_001 | Banana | nucleus | 35.4 | 28.99 |
| GSMUA_Achr11P... | Banana | nucleus | 28.61 | 28.87 |
| CDY36099 | Canola | nucleus | 29.79 | 28.86 |
| CDY16133 | Canola | nucleus | 30.38 | 28.77 |
| CDX83547 | Canola | nucleus | 24.78 | 25.93 |
| CDX84162 | Canola | nucleus | 17.99 | 25.1 |
| CDY43751 | Canola | nucleus | 17.7 | 24.69 |
| CDX75073 | Canola | nucleus | 17.99 | 24.6 |
| CDX73868 | Canola | nucleus | 16.81 | 24.15 |
| CDY43060 | Canola | cytosol | 11.21 | 23.31 |
| CDY62470 | Canola | nucleus | 15.63 | 23.25 |
| CDY08512 | Canola | nucleus | 16.81 | 22.98 |
| CDY01036 | Canola | nucleus | 17.4 | 22.96 |
| CDY47260 | Canola | nucleus | 17.11 | 21.72 |
| Zm00001d024354_P001 | Maize | nucleus, plastid | 17.99 | 21.4 |
| CDX80996 | Canola | nucleus | 16.81 | 20.73 |
| EES14747 | Sorghum | plastid | 16.81 | 20.43 |
| CDY69432 | Canola | nucleus | 16.52 | 20.14 |
| CDX67872 | Canola | nucleus | 16.52 | 19.65 |
| CDX76605 | Canola | nucleus | 16.52 | 19.18 |
| CDY11388 | Canola | nucleus | 16.52 | 19.18 |
| CDX80053 | Canola | nucleus | 16.52 | 18.86 |
| CDY07140 | Canola | nucleus | 16.81 | 18.63 |
| CDY41564 | Canola | nucleus | 16.22 | 18.52 |
| CDY48008 | Canola | nucleus | 16.52 | 18.42 |
| Os02t0455800-01 | Rice | nucleus | 14.45 | 18.35 |
| PGSC0003DMT400040900 | Potato | nucleus | 8.26 | 18.3 |
| KXG24821 | Sorghum | nucleus | 15.34 | 18.25 |
| CDY27515 | Canola | nucleus | 16.22 | 18.09 |
| CDY49614 | Canola | nucleus | 16.52 | 18.06 |
| CDY58763 | Canola | nucleus | 16.81 | 17.92 |
| CDX83351 | Canola | nucleus | 16.22 | 17.86 |
| CDY58764 | Canola | nucleus | 16.81 | 17.81 |
| CDY50908 | Canola | nucleus | 16.52 | 17.78 |
| CDY15208 | Canola | nucleus | 16.81 | 17.7 |
| CDX90001 | Canola | nucleus | 17.4 | 17.15 |
| CDX97251 | Canola | nucleus | 16.81 | 16.81 |
| Os02t0455900-00 | Rice | nucleus | 12.98 | 16.18 |
| CDY70080 | Canola | nucleus | 11.21 | 15.9 |
| CDX98911 | Canola | nucleus | 11.21 | 15.9 |
Protein Annotations
| MapMan:15.5.5.3 | MapMan:15.5.7.5 | Gene3D:2.40.330.10 | Gene3D:3.30.730.10 | GO:A0A078HFG3 | UniProt:A0A078HFG3 |
| InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:B3_DNA-bd | EnsemblPlants:CDY37130 | ProteinID:CDY37130 | ProteinID:CDY37130.1 |
| InterPro:DNA-bd_dom_sf | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00063364001 | InterPro:IPR001471 | InterPro:IPR003340 | InterPro:IPR015300 | InterPro:IPR036955 | PFAM:PF00847 |
| PFAM:PF02362 | PFscan:PS50863 | PFscan:PS51032 | PANTHER:PTHR31140 | PANTHER:PTHR31140:SF13 | SMART:SM00380 |
| SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54171 | UniParc:UPI0004EB9511 | SEG:seg | : |
Description
BnaC06g03690DBnaC06g03690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HFG3]
Coordinates
chrLK032392:-:204102..205121
Molecular Weight (calculated)
39277.5 Da
IEP (calculated)
7.583
GRAVY (calculated)
-0.612
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLVSSAIPM DVAKSETLNT NDSYLPVKKR MRLNEPPTTD KALVSASDNT KYKGVVQHQN GHWGAQIYVD HKRIWLGTFK SAAEAAMSYD SASIKLRTFD
101: ANSQRNFPWS DLTVHEPVFQ KGYTTEAVLN MIKDGSYQRE FKEFLKNRSQ IVSKQNRRDE ESNKQFSCTQ LFQKELTASD VGKLNRLVIP KKYAVKYLPF
201: ISEREEGEIV EDVEVVFYDR EMRQWKFRYC YWSSSQSFVL TRGWIGFVKE KRLKEKDVIT FYTCDVPTLE GQSKKFLMID VHYFSDNDSA VTDEEVNKTV
301: HNSFDDVMKP EINSKLGGEE EAKPEEIKGG FMLFGVRIQ
101: ANSQRNFPWS DLTVHEPVFQ KGYTTEAVLN MIKDGSYQRE FKEFLKNRSQ IVSKQNRRDE ESNKQFSCTQ LFQKELTASD VGKLNRLVIP KKYAVKYLPF
201: ISEREEGEIV EDVEVVFYDR EMRQWKFRYC YWSSSQSFVL TRGWIGFVKE KRLKEKDVIT FYTCDVPTLE GQSKKFLMID VHYFSDNDSA VTDEEVNKTV
301: HNSFDDVMKP EINSKLGGEE EAKPEEIKGG FMLFGVRIQ
001: MRLDDEPENA LVVSSSPKTV VASGNVKYKG VVQQQNGHWG AQIYADHKRI WLGTFKSADE AATAYDSASI KLRSFDANSH RNFPWSTITL NEPDFQNCYT
101: TETVLNMIRD GSYQHKFRDF LRIRSQIVAS INIGGPKQAR GEVNQESDKC FSCTQLFQKE LTPSDVGKLN RLVIPKKYAV KYMPFISADQ SEKEEGEIVG
201: SVEDVEVVFY DRAMRQWKFR YCYWKSSQSF VFTRGWNSFV KEKNLKEKDV IAFYTCDVPN NVKTLEGQRK NFLMIDVHCF SDNGSVVAEE VSMTVHDSSV
301: QVKKTENLVS SMLEDKETKS EENKGGFMLF GVRIECP
101: TETVLNMIRD GSYQHKFRDF LRIRSQIVAS INIGGPKQAR GEVNQESDKC FSCTQLFQKE LTPSDVGKLN RLVIPKKYAV KYMPFISADQ SEKEEGEIVG
201: SVEDVEVVFY DRAMRQWKFR YCYWKSSQSF VFTRGWNSFV KEKNLKEKDV IAFYTCDVPN NVKTLEGQRK NFLMIDVHCF SDNGSVVAEE VSMTVHDSSV
301: QVKKTENLVS SMLEDKETKS EENKGGFMLF GVRIECP
Arabidopsis Description
AP2/ERF and B3 domain-containing transcription factor At1g50680 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6P5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.