Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G51120.1 | Thale cress | nucleus | 77.74 | 74.43 |
| Bra030458.1-P | Field mustard | nucleus | 69.44 | 74.05 |
| CDY29620 | Canola | nucleus | 70.03 | 68.6 |
| CDY35575 | Canola | nucleus | 69.44 | 67.83 |
| Bra014282.1-P | Field mustard | nucleus | 67.66 | 67.26 |
| CDY51249 | Canola | nucleus | 67.36 | 66.96 |
| CDY46564 | Canola | nucleus | 66.77 | 66.37 |
| CDY37130 | Canola | nucleus | 66.77 | 66.37 |
| CDY22814 | Canola | nucleus | 66.17 | 66.17 |
| Bra018854.1-P | Field mustard | nucleus | 66.17 | 65.59 |
| CDY37109 | Canola | nucleus | 64.39 | 65.17 |
| Bra018868.1-P | Field mustard | nucleus | 64.69 | 64.5 |
| CDY22826 | Canola | nucleus | 64.39 | 64.2 |
| Bra018894.1-P | Field mustard | nucleus | 64.09 | 63.91 |
| Bra018869.1-P | Field mustard | nucleus | 61.72 | 62.28 |
| CDY25209 | Canola | nucleus | 64.39 | 61.13 |
| CDY37108 | Canola | nucleus, plastid | 61.72 | 60.64 |
| CDY22801 | Canola | nucleus | 60.83 | 58.91 |
| KRG93082 | Soybean | nucleus | 46.29 | 48.9 |
| PGSC0003DMT400085602 | Potato | nucleus | 17.21 | 45.31 |
| VIT_11s0037g00010.t01 | Wine grape | nucleus | 46.29 | 43.7 |
| Solyc03g083110.1.1 | Tomato | nucleus | 40.95 | 41.19 |
| GSMUA_Achr11P... | Banana | nucleus | 31.16 | 31.25 |
| PGSC0003DMT400092316 | Potato | nucleus | 12.17 | 30.83 |
| AT1G13260.1 | Thale cress | nucleus | 31.16 | 30.52 |
| GSMUA_Achr8P14650_001 | Banana | nucleus | 36.5 | 29.71 |
| Solyc12g098460.1.1 | Tomato | nucleus | 18.4 | 29.67 |
| AT3G25730.1 | Thale cress | nucleus | 29.08 | 29.43 |
| AT1G25560.1 | Thale cress | nucleus | 30.27 | 28.25 |
| AT1G68840.1 | Thale cress | nucleus | 29.38 | 28.12 |
| AT2G36080.1 | Thale cress | nucleus | 17.21 | 23.77 |
| Zm00001d024354_P001 | Maize | nucleus, plastid | 18.99 | 22.46 |
| AT5G06250.4 | Thale cress | nucleus | 18.69 | 22.18 |
| EES14747 | Sorghum | plastid | 17.51 | 21.15 |
| Os02t0455800-01 | Rice | nucleus | 15.73 | 19.85 |
| AT3G61970.1 | Thale cress | nucleus | 16.62 | 18.73 |
| KXG24821 | Sorghum | nucleus | 15.73 | 18.6 |
| AT4G01500.1 | Thale cress | nucleus | 17.51 | 17.72 |
| PGSC0003DMT400040900 | Potato | nucleus | 8.01 | 17.65 |
| AT2G46870.1 | Thale cress | nucleus | 15.73 | 17.1 |
| Os02t0455900-00 | Rice | nucleus | 13.65 | 16.91 |
| AT1G01030.1 | Thale cress | nucleus | 17.8 | 16.76 |
| AT3G11580.3 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 16.91 | 15.36 |
Protein Annotations
| MapMan:15.5.5.3 | MapMan:15.5.7.5 | Gene3D:2.40.330.10 | Gene3D:3.30.730.10 | EntrezGene:841490 | ProteinID:AAG51186.1 |
| ProteinID:AEE32578.1 | InterPro:AP2/ERF-transcript_factor | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | ArrayExpress:AT1G50680 | EnsemblPlantsGene:AT1G50680 |
| RefSeq:AT1G50680 | TAIR:AT1G50680 | RefSeq:AT1G50680-TAIR-G | EnsemblPlants:AT1G50680.1 | TAIR:AT1G50680.1 | EMBL:AY560882 |
| Unigene:At.50579 | InterPro:B3_DNA-bd | InterPro:DNA-bd_dom_sf | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009873 | GO:GO:0009987 |
| InterPro:IPR001471 | InterPro:IPR003340 | InterPro:IPR015300 | InterPro:IPR036955 | RefSeq:NP_175483.1 | PFAM:PF00847 |
| PFAM:PF02362 | PIRSF:PIRSF038123 | PRINTS:PR00367 | PFscan:PS50863 | PFscan:PS51032 | PANTHER:PTHR31140 |
| PANTHER:PTHR31140:SF13 | UniProt:Q9C6P5 | SMART:SM00380 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54171 |
| UniParc:UPI00000A471B | : | : | : | : | : |
Description
AP2/ERF and B3 domain-containing transcription factor At1g50680 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6P5]
Coordinates
chr1:-:18777601..18778614
Molecular Weight (calculated)
38475.4 Da
IEP (calculated)
7.076
GRAVY (calculated)
-0.523
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLDDEPENA LVVSSSPKTV VASGNVKYKG VVQQQNGHWG AQIYADHKRI WLGTFKSADE AATAYDSASI KLRSFDANSH RNFPWSTITL NEPDFQNCYT
101: TETVLNMIRD GSYQHKFRDF LRIRSQIVAS INIGGPKQAR GEVNQESDKC FSCTQLFQKE LTPSDVGKLN RLVIPKKYAV KYMPFISADQ SEKEEGEIVG
201: SVEDVEVVFY DRAMRQWKFR YCYWKSSQSF VFTRGWNSFV KEKNLKEKDV IAFYTCDVPN NVKTLEGQRK NFLMIDVHCF SDNGSVVAEE VSMTVHDSSV
301: QVKKTENLVS SMLEDKETKS EENKGGFMLF GVRIECP
101: TETVLNMIRD GSYQHKFRDF LRIRSQIVAS INIGGPKQAR GEVNQESDKC FSCTQLFQKE LTPSDVGKLN RLVIPKKYAV KYMPFISADQ SEKEEGEIVG
201: SVEDVEVVFY DRAMRQWKFR YCYWKSSQSF VFTRGWNSFV KEKNLKEKDV IAFYTCDVPN NVKTLEGQRK NFLMIDVHCF SDNGSVVAEE VSMTVHDSSV
301: QVKKTENLVS SMLEDKETKS EENKGGFMLF GVRIECP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.