Factsheet for AT1G68840.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX81561	Canola	nucleus	79.55	81.63
CDY45849	Canola	nucleus, plastid	78.69	79.14
Bra038346.1-P	Field mustard	nucleus, plastid	78.69	79.14
AT1G25560.1	Thale cress	nucleus	75.57	73.68
AT1G13260.1	Thale cress	nucleus	64.49	65.99
GSMUA_Achr5P09950_001	Banana	nucleus	56.82	62.11
AT3G25730.1	Thale cress	nucleus	58.24	61.56
KRH34761	Soybean	nucleus	59.94	60.11
VIT_01s0011g03070.t01	Wine grape	nucleus	64.2	59.79
GSMUA_Achr1P05400_001	Banana	nucleus	50.57	59.73
KRG92025	Soybean	nucleus	61.08	59.39
KRH75484	Soybean	nucleus	61.93	56.77
KRH70603	Soybean	nucleus	63.35	55.61
Solyc05g009790.1.1	Tomato	nucleus	62.22	55.44
PGSC0003DMT400002125	Potato	nucleus	62.5	55.28
GSMUA_Achr10P...	Banana	nucleus	45.45	54.79
GSMUA_Achr4P03670_001	Banana	nucleus	45.74	54.76
GSMUA_Achr6P09880_001	Banana	nucleus	44.6	54.33
GSMUA_Achr3P29380_001	Banana	nucleus	40.34	53.99
GSMUA_Achr2P22560_001	Banana	nucleus	47.16	53.55
TraesCS3D01G260100.1	Wheat	nucleus	55.4	52.14
TraesCS3A01G259900.1	Wheat	nucleus	55.11	51.73
HORVU3Hr1G064590.1	Barley	nucleus	28.12	51.03
TraesCS3B01G293000.1	Wheat	nucleus	55.4	50.91
GSMUA_Achr4P06710_001	Banana	nucleus	50.57	50.86
Zm00001d009468_P001	Maize	nucleus, plastid	53.69	50.4
HORVU3Hr1G064640.4	Barley	nucleus	54.26	50.26
HORVU4Hr1G074300.4	Barley	nucleus	21.31	50.0
Zm00001d043782_P001	Maize	nucleus	55.11	49.87
Os05t0549800-01	Rice	nucleus	48.58	49.85
TraesCS1B01G392300.1	Wheat	nucleus	55.11	49.62
GSMUA_AchrUn_...	Banana	nucleus	52.56	49.47
TraesCS1A01G372300.1	Wheat	nucleus	54.83	49.23
HORVU1Hr1G082670.6	Barley	nucleus	54.83	49.11
Os01t0693400-01	Rice	nucleus	54.83	49.11
TraesCS1D01G378900.1	Wheat	nucleus	54.55	48.98
KXG22484	Sorghum	nucleus, plastid	55.68	48.04
Zm00001d038907_P001	Maize	nucleus, plastid	55.11	47.78
EES03472	Sorghum	nucleus, plastid	55.4	47.22
TraesCS1B01G392000.1	Wheat	nucleus	54.26	46.47
Zm00001d011639_P001	Maize	nucleus	53.41	46.42
TraesCS1D01G378400.1	Wheat	nucleus	54.26	46.36
GSMUA_Achr9P21470_001	Banana	nucleus	40.62	46.13
TraesCS1D01G378500.1	Wheat	nucleus	54.83	46.06
TraesCS1D01G378800.1	Wheat	nucleus	53.98	45.78
TraesCS1A01G372200.1	Wheat	nucleus	53.69	45.76
TraesCS1B01G392200.1	Wheat	nucleus, plastid	53.69	45.43
TraesCS1A01G372100.1	Wheat	nucleus	53.41	42.53
GSMUA_Achr3P21100_001	Banana	nucleus	48.01	41.02
AT2G36080.1	Thale cress	nucleus	24.15	34.84
AT5G06250.4	Thale cress	nucleus	25.28	31.34
AT2G46870.1	Thale cress	nucleus	26.14	29.68
AT3G61970.1	Thale cress	nucleus	25.0	29.43
AT1G50680.1	Thale cress	nucleus	28.12	29.38
AT4G01500.1	Thale cress	nucleus	26.42	27.93
AT1G51120.1	Thale cress	nucleus	27.56	27.56
AT1G01030.1	Thale cress	nucleus	26.14	25.7
AT3G11580.3	Thale cress	cytosol, endoplasmic reticulum, nucleus	24.43	23.18

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	EntrezGene:843216	UniProt:A0A178WNP0
ProteinID:AAG51586.1	ProteinID:AAG52035.1	EMBL:AB013887	ProteinID:AEE34847.1	ProteinID:AEE34848.1	EMBL:AF003101
EMBL:AF360312	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ArrayExpress:AT1G68840	EnsemblPlantsGene:AT1G68840	RefSeq:AT1G68840
TAIR:AT1G68840	RefSeq:AT1G68840-TAIR-G	EnsemblPlants:AT1G68840.1	TAIR:AT1G68840.1	EMBL:AY056361	EMBL:AY085908
Unigene:At.25344	InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009873
GO:GO:0009987	GO:GO:0043565	GO:GO:0045892	InterPro:IPR001471	InterPro:IPR003340	InterPro:IPR015300
InterPro:IPR036955	RefSeq:NP_001185352.1	RefSeq:NP_564947.1	ProteinID:OAP19878.1	UniProt:P82280	PFAM:PF00847
PFAM:PF02362	PO:PO:0000005	PO:PO:0000013	PO:PO:0000037	PO:PO:0000293	PO:PO:0001054
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007616	PO:PO:0009005	PO:PO:0009025	PO:PO:0009029	PO:PO:0009047	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PFscan:PS50863	PFscan:PS51032
PANTHER:PTHR31140	PANTHER:PTHR31140:SF9	Symbol:RAV2	SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936
SUPFAM:SSF54171	UniParc:UPI00000ABB81	SEG:seg	:	:	:

Description

RAV2TEM2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNP0]

Coordinates

chr1:+:25880155..25881955

Molecular Weight (calculated)

39494.9 Da

IEP (calculated)

9.868

GRAVY (calculated)

-0.512

Length

352 amino acids

Sequence
(BLAST)

001: MDSSCIDEIS SSTSESFSAT TAKKLSPPPA AALRLYRMGS GGSSVVLDPE NGLETESRKL PSSKYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEQEEAAR
101: SYDIAACRFR GRDAVVNFKN VLEDGDLAFL EAHSKAEIVD MLRKHTYADE LEQNNKRQLF LSVDANGKRN GSSTTQNDKV LKTREVLFEK AVTPSDVGKL
201: NRLVIPKQHA EKHFPLPSPS PAVTKGVLIN FEDVNGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLRAG DVVTFERSTG LERQLYIDWK VRSGPRENPV
301: QVVVRLFGVD IFNVTTVKPN DVVAVCGGKR SRDVDDMFAL RCSKKQAIIN AL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.