Factsheet for TraesCS1A01G372100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G378500.1	Wheat	nucleus	87.56	92.36
TraesCS1A01G372200.1	Wheat	nucleus	83.71	89.59
TraesCS1B01G392000.1	Wheat	nucleus	81.9	88.08
TraesCS1A01G372300.1	Wheat	nucleus	78.05	88.01
HORVU1Hr1G082670.6	Barley	nucleus	76.02	85.5
KXG22484	Sorghum	nucleus, plastid	64.48	69.85
Zm00001d009468_P001	Maize	nucleus, plastid	58.37	68.8
Os05t0549800-01	Rice	nucleus	52.26	67.35
TraesCS3A01G259900.1	Wheat	nucleus	56.11	66.13
GSMUA_Achr1P21250_001	Banana	nucleus	39.37	59.18
HORVU4Hr1G074300.4	Barley	nucleus	19.0	56.0
CDY72302	Canola	nucleus	40.95	55.52
KRH34761	Soybean	nucleus	43.89	55.27
CDY40973	Canola	nucleus	39.37	55.24
CDY58354	Canola	nucleus	40.72	55.21
CDX97996	Canola	nucleus	40.5	55.08
CDY61361	Canola	nucleus	40.27	54.43
KRG92025	Soybean	nucleus	44.57	54.42
CDY24391	Canola	nucleus	40.95	53.55
AT1G68840.1	Thale cress	nucleus	42.53	53.41
AT1G13260.1	Thale cress	nucleus	41.4	53.2
AT3G25730.1	Thale cress	nucleus	40.05	53.15
CDY36099	Canola	nucleus	42.08	53.14
CDX81561	Canola	nucleus	41.18	53.06
Bra026917.1-P	Field mustard	nucleus	40.72	52.94
Bra019821.1-P	Field mustard	nucleus	40.5	52.49
CDX84999	Canola	nucleus	41.86	52.26
GSMUA_Achr6P01420_001	Banana	nucleus	37.33	52.22
Bra026509.1-P	Field mustard	nucleus	38.46	52.15
Bra038346.1-P	Field mustard	nucleus, plastid	41.18	52.0
CDY45849	Canola	nucleus, plastid	41.18	52.0
Bra011002.1-P	Field mustard	nucleus	42.08	51.81
CDX99755	Canola	nucleus	39.82	51.76
CDY16133	Canola	nucleus	41.63	51.4
AT1G25560.1	Thale cress	nucleus	41.86	51.25
TraesCS3A01G054000.1	Wheat	nucleus	40.95	50.84
VIT_01s0011g03070.t01	Wine grape	nucleus	43.44	50.79
TraesCS3A01G053900.1	Wheat	nucleus	36.65	50.62
KRH75484	Soybean	nucleus	43.44	50.0
KRH70603	Soybean	nucleus	44.8	49.38
Bra024735.1-P	Field mustard	nucleus	41.4	49.19
CDX83547	Canola	nucleus	35.97	49.07
Solyc05g009790.1.1	Tomato	nucleus	43.67	48.86
PGSC0003DMT400002125	Potato	nucleus	43.44	48.24
TraesCS5A01G497900.1	Wheat	nucleus	39.14	47.01
TraesCS7A01G461000.1	Wheat	nucleus	18.78	42.56
TraesCS7A01G020800.1	Wheat	nucleus	18.78	41.92
TraesCS4A01G472700.1	Wheat	nucleus	19.91	40.55
TraesCS7A01G020700.1	Wheat	nucleus	19.0	39.07
TraesCS2A01G460700.1	Wheat	nucleus	20.81	34.59
TraesCS5A01G127100.1	Wheat	nucleus	20.59	34.21
TraesCS4A01G198300.2	Wheat	nucleus	21.04	33.33
TraesCS1A01G200500.1	Wheat	nucleus	20.81	33.09
TraesCS5A01G516600.1	Wheat	nucleus	21.72	30.28
TraesCS2A01G394700.1	Wheat	nucleus	24.89	27.23
TraesCS6A01G259600.1	Wheat	nucleus	24.66	26.33

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR003340	InterPro:IPR015300	InterPro:IPR036955
PFAM:PF00847	PFAM:PF02362	PFscan:PS50863	PFscan:PS51032	PANTHER:PTHR31140	PANTHER:PTHR31140:SF21
SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS1A01G372100	EnsemblPlants:TraesCS1A01G372100.1
TIGR:cd00018	TIGR:cd10017	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1A:+:548733372..548734700

Molecular Weight (calculated)

47634.7 Da

IEP (calculated)

10.081

GRAVY (calculated)

-0.449

Length

442 amino acids

Sequence
(BLAST)

001: MESARSCLME DVSSGASTGN KASAVPAAPA TKPLQRVGSG ASAVMDAPEP GAEADSGRGG RLPSSKYKGV VPQPNGRWGA QIYERHQRVW LGTFTGEAEA
101: ARAYDAAAHR FRGRDAVTNF RPLVESDADD AAELRFLAAR SKAEVVDMLR KHIYPDELAQ HKRAFLASAA SSPTSSSSAP ASSAPSAAAP SAATRREHLF
201: DKTVTPSDVG KLNRLVIPKQ HAEKHFPLQL PSAGTAVSGE CKGALLNFDD AAGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKGLHAGDAV VFYRSASGNN
301: QFFIDCKLRS MTTTTTFVNA TAATTSPAPV MRTVRLFGVD LLTAPALRHA PEHEDYGMAK TNKRFVDASV AAATPAHAVW KKRCVDFSLT YSHATTSQCP
401: TSRDQLEGIQ AAGSTFALQT CHHSPHSARG QKSSWNQQRK YS

Best Arabidopsis Sequence Match ( AT1G13260.1 )
(BLAST)

001: MESSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS

Arabidopsis Description

RAV1AP2/ERF and B3 domain-containing transcription factor RAV1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.