Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G064590.1 | Barley | nucleus | 54.67 | 42.27 |
| HORVU3Hr1G010200.1 | Barley | mitochondrion | 49.33 | 33.79 |
| HORVU0Hr1G022200.1 | Barley | nucleus | 38.67 | 29.0 |
| HORVU7Hr1G002230.1 | Barley | nucleus | 38.67 | 26.36 |
| HORVU1Hr1G051780.2 | Barley | nucleus | 50.0 | 25.6 |
| HORVU7Hr1G046950.1 | Barley | nucleus | 46.67 | 25.55 |
| GSMUA_Achr6P01420_001 | Banana | nucleus | 53.33 | 25.32 |
| GSMUA_Achr1P21250_001 | Banana | nucleus | 48.67 | 24.83 |
| HORVU4Hr1G021650.22 | Barley | nucleus | 45.33 | 24.37 |
| Os05t0549800-01 | Rice | nucleus | 54.67 | 23.91 |
| HORVU5Hr1G040620.4 | Barley | nucleus | 43.33 | 23.72 |
| KRH34761 | Soybean | nucleus | 54.67 | 23.36 |
| KRG92025 | Soybean | nucleus | 55.33 | 22.93 |
| CDY40973 | Canola | nucleus | 47.33 | 22.54 |
| AT3G25730.1 | Thale cress | nucleus | 50.0 | 22.52 |
| CDX97996 | Canola | nucleus | 48.67 | 22.46 |
| CDY72302 | Canola | nucleus | 48.67 | 22.39 |
| CDY58354 | Canola | nucleus | 48.67 | 22.39 |
| CDY61361 | Canola | nucleus | 48.67 | 22.32 |
| HORVU4Hr1G084950.3 | Barley | nucleus | 50.67 | 22.29 |
| TraesCS1B01G392300.1 | Wheat | nucleus | 57.33 | 21.99 |
| TraesCS1D01G378900.1 | Wheat | nucleus | 57.33 | 21.94 |
| TraesCS1A01G372300.1 | Wheat | nucleus | 57.33 | 21.94 |
| HORVU3Hr1G010100.2 | Barley | nucleus | 46.67 | 21.88 |
| Bra026509.1-P | Field mustard | nucleus | 47.33 | 21.78 |
| CDY24391 | Canola | nucleus | 48.67 | 21.6 |
| HORVU3Hr1G064640.4 | Barley | nucleus | 54.67 | 21.58 |
| CDX81561 | Canola | nucleus | 49.33 | 21.57 |
| CDX99755 | Canola | nucleus | 48.67 | 21.47 |
| Bra026917.1-P | Field mustard | nucleus | 48.67 | 21.47 |
| Bra019821.1-P | Field mustard | nucleus | 48.67 | 21.41 |
| HORVU1Hr1G082670.6 | Barley | nucleus | 56.0 | 21.37 |
| AT1G68840.1 | Thale cress | nucleus | 50.0 | 21.31 |
| HORVU3Hr1G010240.1 | Barley | nucleus | 49.33 | 21.26 |
| AT1G13260.1 | Thale cress | nucleus | 48.67 | 21.22 |
| VIT_01s0011g03070.t01 | Wine grape | nucleus | 53.33 | 21.16 |
| CDY36099 | Canola | nucleus | 49.33 | 21.14 |
| CDY45849 | Canola | nucleus, plastid | 48.67 | 20.86 |
| Bra038346.1-P | Field mustard | nucleus, plastid | 48.67 | 20.86 |
| KRH75484 | Soybean | nucleus | 53.33 | 20.83 |
| Bra011002.1-P | Field mustard | nucleus | 49.33 | 20.61 |
| TraesCS1D01G378500.1 | Wheat | nucleus | 57.33 | 20.53 |
| TraesCS1B01G392000.1 | Wheat | nucleus | 56.0 | 20.44 |
| KXG22484 | Sorghum | nucleus, plastid | 55.33 | 20.34 |
| CDX84999 | Canola | nucleus | 48.0 | 20.34 |
| KRH70603 | Soybean | nucleus | 54.0 | 20.2 |
| TraesCS1A01G372200.1 | Wheat | nucleus | 55.33 | 20.1 |
| HORVU4Hr1G082090.2 | Barley | mitochondrion | 46.0 | 20.06 |
| Zm00001d009468_P001 | Maize | nucleus, plastid | 50.0 | 20.0 |
| AT1G25560.1 | Thale cress | nucleus | 48.0 | 19.94 |
| TraesCS1D01G378400.1 | Wheat | nucleus | 54.67 | 19.9 |
| HORVU3Hr1G010060.1 | Barley | nucleus | 46.67 | 19.89 |
| CDY16133 | Canola | nucleus | 47.33 | 19.83 |
| Solyc05g009790.1.1 | Tomato | nucleus | 52.0 | 19.75 |
| TraesCS1B01G392200.1 | Wheat | nucleus, plastid | 54.67 | 19.71 |
| PGSC0003DMT400002125 | Potato | nucleus | 52.0 | 19.6 |
| HORVU3Hr1G010190.5 | Barley | nucleus | 50.0 | 19.53 |
| Bra024735.1-P | Field mustard | nucleus | 48.0 | 19.35 |
| TraesCS1D01G378800.1 | Wheat | nucleus | 53.33 | 19.28 |
| HORVU3Hr1G010140.3 | Barley | nucleus | 49.33 | 19.07 |
| TraesCS1A01G372100.1 | Wheat | nucleus | 56.0 | 19.0 |
| HORVU6Hr1G066190.2 | Barley | nucleus | 51.33 | 18.83 |
| HORVU4Hr1G082030.2 | Barley | nucleus | 28.67 | 16.93 |
| CDX83547 | Canola | nucleus | 34.67 | 16.05 |
| HORVU3Hr1G010260.2 | Barley | mitochondrion | 16.67 | 12.63 |
Protein Annotations
| MapMan:15.5.5.3 | Gene3D:2.40.330.10 | UniProt:A0A287PNN5 | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU4Hr1G074300 | EnsemblPlants:HORVU4Hr1G074300.4 | InterPro:IPR003340 | InterPro:IPR015300 |
| PFAM:PF02362 | PFscan:PS50863 | PANTHER:PTHR31140 | PANTHER:PTHR31140:SF21 | SMART:SM01019 | SUPFAM:SSF101936 |
| UniParc:UPI000B489237 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:-:593645980..593647196
Molecular Weight (calculated)
16513.7 Da
IEP (calculated)
9.442
GRAVY (calculated)
-0.424
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MHLFDKTVTP SDVGKLNRLV IPKQHAEKHF PLQLPSAGAA VSGECKGMLL NFDDVAGKVW RFQYSYWNNN QSYVLTKGWS RFVKEKGLHG ELVGRRLQAG
101: DGLGGAAEEE LGGLGVEEKK VYFWLSGPAG ERESVFPGSK RSGPVLPVRD
101: DGLGGAAEEE LGGLGVEEKK VYFWLSGPAG ERESVFPGSK RSGPVLPVRD
001: MDSSCIDEIS SSTSESFSAT TAKKLSPPPA AALRLYRMGS GGSSVVLDPE NGLETESRKL PSSKYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEQEEAAR
101: SYDIAACRFR GRDAVVNFKN VLEDGDLAFL EAHSKAEIVD MLRKHTYADE LEQNNKRQLF LSVDANGKRN GSSTTQNDKV LKTREVLFEK AVTPSDVGKL
201: NRLVIPKQHA EKHFPLPSPS PAVTKGVLIN FEDVNGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLRAG DVVTFERSTG LERQLYIDWK VRSGPRENPV
301: QVVVRLFGVD IFNVTTVKPN DVVAVCGGKR SRDVDDMFAL RCSKKQAIIN AL
101: SYDIAACRFR GRDAVVNFKN VLEDGDLAFL EAHSKAEIVD MLRKHTYADE LEQNNKRQLF LSVDANGKRN GSSTTQNDKV LKTREVLFEK AVTPSDVGKL
201: NRLVIPKQHA EKHFPLPSPS PAVTKGVLIN FEDVNGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLRAG DVVTFERSTG LERQLYIDWK VRSGPRENPV
301: QVVVRLFGVD IFNVTTVKPN DVVAVCGGKR SRDVDDMFAL RCSKKQAIIN AL
Arabidopsis Description
RAV2TEM2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNP0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.