Factsheet for HORVU4Hr1G082090.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G325600.1	Wheat	nucleus	81.98	91.56
TraesCS4D01G322500.1	Wheat	nucleus	80.23	90.49
HORVU3Hr1G010100.2	Barley	nucleus	75.0	80.62
HORVU3Hr1G010060.1	Barley	nucleus	76.16	74.43
HORVU4Hr1G082030.2	Barley	nucleus	40.7	55.12
HORVU3Hr1G010200.1	Barley	mitochondrion	33.43	52.51
HORVU3Hr1G010240.1	Barley	nucleus	52.91	52.3
HORVU3Hr1G010190.5	Barley	nucleus	54.65	48.96
OQU77426	Sorghum	nucleus	21.8	46.58
HORVU4Hr1G074300.4	Barley	nucleus	20.06	46.0
HORVU3Hr1G064590.1	Barley	nucleus	25.0	44.33
HORVU3Hr1G064640.4	Barley	nucleus	47.97	43.42
HORVU1Hr1G082670.6	Barley	nucleus	46.8	40.97
HORVU0Hr1G022200.1	Barley	nucleus	22.09	38.0
HORVU7Hr1G002230.1	Barley	nucleus	21.8	34.09
HORVU5Hr1G040620.4	Barley	nucleus	23.26	29.2
HORVU4Hr1G021650.22	Barley	nucleus	22.97	28.32
HORVU1Hr1G051780.2	Barley	nucleus	23.55	27.65
HORVU7Hr1G046950.1	Barley	nucleus	21.22	26.64
HORVU3Hr1G010140.3	Barley	nucleus	29.94	26.55
HORVU3Hr1G010260.2	Barley	mitochondrion	14.53	25.25
HORVU4Hr1G084950.3	Barley	nucleus	24.13	24.34
HORVU6Hr1G066190.2	Barley	nucleus	26.74	22.49

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	UniProt:A0A287PW23	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:HORVU4Hr1G082090	EnsemblPlants:HORVU4Hr1G082090.2	InterPro:IPR001471	InterPro:IPR003340
InterPro:IPR015300	InterPro:IPR036955	PFAM:PF00847	PFAM:PF02362	PFscan:PS50863	PFscan:PS51032
PANTHER:PTHR31140	PANTHER:PTHR31140:SF9	SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54171
UniParc:UPI000B461FEE	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:+:621191414..621192527

Molecular Weight (calculated)

37799.8 Da

IEP (calculated)

6.440

GRAVY (calculated)

-0.597

Length

344 amino acids

Sequence
(BLAST)

001: CFLTIPRSRH KSRHLRNDHS ACQLSPPMAS SKPTNPEVDN DMECSSPESG AEDAVESSSP VAAPSSRFKG VVPQPNGRWG AQIYEKHSRV WLGTFGDEEA
101: AACAYDVAAL RFRGRDAVTN HQRLPAAEGA GWSSTSELAF LADHSKAEIV DMLRKHTYDD ELRQGLRRGH GRAQPTPAWA REFLFEKALT PSDVGKLNRL
201: VVPKQHAEKH FPPTTAAAAG SDGKGLLLNF EDGQGKVWRF RYSYWNSSQS YVLTKGWSRF VQEKGLCAGD TVTFSRSAYV MNDTDEQLFI DYKQSSKNDE
301: AADVATADEN EAGHVAVKLF GVDIGWAGMA GSSDAEMLVS ERQS

Best Arabidopsis Sequence Match ( AT1G13260.1 )
(BLAST)

001: MESSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS

Arabidopsis Description

RAV1AP2/ERF and B3 domain-containing transcription factor RAV1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.