Factsheet for HORVU3Hr1G010140.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G010200.1	Barley	mitochondrion	40.98	72.6
TraesCS3B01G064900.1	Wheat	nucleus	48.97	53.37
TraesCS3D01G052300.1	Wheat	nucleus	48.71	53.09
TraesCS3A01G054000.1	Wheat	nucleus	48.71	53.09
HORVU4Hr1G074300.4	Barley	nucleus	19.07	49.33
HORVU3Hr1G064590.1	Barley	nucleus	24.48	48.97
HORVU3Hr1G010240.1	Barley	nucleus	42.27	47.13
HORVU3Hr1G010190.5	Barley	nucleus	42.01	42.45
Os01t0141000-01	Rice	nucleus, plastid	37.37	39.73
HORVU0Hr1G022200.1	Barley	nucleus	19.85	38.5
Zm00001d039907_P001	Maize	nucleus	37.11	38.1
EES02511	Sorghum	nucleus	37.63	37.63
HORVU3Hr1G010100.2	Barley	nucleus	27.58	33.44
HORVU7Hr1G002230.1	Barley	nucleus	18.81	33.18
HORVU3Hr1G010060.1	Barley	nucleus	27.58	30.4
HORVU4Hr1G082090.2	Barley	mitochondrion	26.55	29.94
HORVU1Hr1G051780.2	Barley	nucleus	20.62	27.3
HORVU4Hr1G082030.2	Barley	nucleus	17.78	27.17
HORVU5Hr1G040620.4	Barley	nucleus	18.3	25.91
HORVU4Hr1G021650.22	Barley	nucleus	18.56	25.81
HORVU3Hr1G064640.4	Barley	nucleus	24.74	25.26
HORVU1Hr1G082670.6	Barley	nucleus	25.52	25.19
HORVU7Hr1G046950.1	Barley	nucleus	17.78	25.18
HORVU4Hr1G084950.3	Barley	nucleus	21.13	24.05
HORVU6Hr1G066190.2	Barley	nucleus	22.16	21.03
HORVU3Hr1G010260.2	Barley	mitochondrion	8.25	16.16

Protein Annotations

MapMan:15.5.5.3	Gene3D:2.40.330.10	UniProt:A0A287K2P5	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:HORVU3Hr1G010140	EnsemblPlants:HORVU3Hr1G010140.3	InterPro:IPR003340	InterPro:IPR015300
PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF9	SMART:SM01019	SUPFAM:SSF101936
UniParc:UPI000B461BFD	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:-:21660162..21661538

Molecular Weight (calculated)

22034.2 Da

IEP (calculated)

10.152

GRAVY (calculated)

-0.272

Length

388 amino acids

Sequence
(BLAST)

001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
101: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXM GARAQPTPSW
201: AREPLFEKAV TPSDVGKLNR LVVPKQHAEK HFPLKRTPET TTTTGKGVLL NFEDGEGKVW RFRYSYWNSS QSYVLTKGWS RFVREKGLGA GDSIVFSCSA
301: YGQEKQFFID CKKNKTMTSC PADDRGAATA SPPVSEPTKG EQVRVVRLFG VDIAGEKRGR AAPVEQELFK RQCVAHSQHS PALGAFVL

Best Arabidopsis Sequence Match ( AT1G13260.1 )
(BLAST)

001: MESSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS

Arabidopsis Description

RAV1AP2/ERF and B3 domain-containing transcription factor RAV1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.