Factsheet for HORVU3Hr1G010100.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G179500.1	Wheat	nucleus	96.88	96.88
TraesCS3A01G053900.1	Wheat	nucleus	95.94	95.94
HORVU3Hr1G010060.1	Barley	nucleus	100.0	90.91
HORVU4Hr1G082090.2	Barley	mitochondrion	80.62	75.0
HORVU4Hr1G082030.2	Barley	nucleus	44.38	55.91
HORVU3Hr1G010200.1	Barley	mitochondrion	38.12	55.71
HORVU3Hr1G010240.1	Barley	nucleus	59.69	54.89
HORVU3Hr1G010190.5	Barley	nucleus	60.31	50.26
OQU77426	Sorghum	nucleus	24.38	48.45
HORVU4Hr1G074300.4	Barley	nucleus	21.88	46.67
HORVU3Hr1G064590.1	Barley	nucleus	27.19	44.85
HORVU3Hr1G064640.4	Barley	nucleus	51.25	43.16
HORVU1Hr1G082670.6	Barley	nucleus	49.69	40.46
HORVU0Hr1G022200.1	Barley	nucleus	24.38	39.0
HORVU7Hr1G002230.1	Barley	nucleus	23.75	34.55
HORVU5Hr1G040620.4	Barley	nucleus	25.0	29.2
HORVU1Hr1G051780.2	Barley	nucleus	26.25	28.67
HORVU4Hr1G021650.22	Barley	nucleus	24.38	27.96
HORVU3Hr1G010140.3	Barley	nucleus	33.44	27.58
HORVU7Hr1G046950.1	Barley	nucleus	23.44	27.37
Os02t0764100-01	Rice	mitochondrion	20.94	26.48
HORVU3Hr1G010260.2	Barley	mitochondrion	15.94	25.76
HORVU4Hr1G084950.3	Barley	nucleus	25.94	24.34
HORVU6Hr1G066190.2	Barley	nucleus	28.44	22.25

Protein Annotations

MapMan:15.5.5.3	MapMan:15.5.7.5	Gene3D:2.40.330.10	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:B3_DNA-bd	InterPro:DNA-bd_dom_sf	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:HORVU3Hr1G010100	EnsemblPlants:HORVU3Hr1G010100.2	InterPro:IPR001471	InterPro:IPR003340	InterPro:IPR015300
InterPro:IPR036955	UniProt:M0WW39	PFAM:PF00847	PFAM:PF02362	PFscan:PS50863	PFscan:PS51032
PANTHER:PTHR31140	PANTHER:PTHR31140:SF9	SMART:SM00380	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54171
UniParc:UPI0002966A20	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:+:21231415..21243091

Molecular Weight (calculated)

34834.2 Da

IEP (calculated)

5.470

GRAVY (calculated)

-0.677

Length

320 amino acids

Sequence
(BLAST)

001: MASGKPTNPG MEDDNDMEYS SAESGAEDAA ESSSSPVLAP PRAAPSSRFK GVVPQPNGRW GAQIYEKHSR VWLGTFPDED AAARAYDVAA LRFRGPDAVI
101: NHQRPTAAEE AGSSSSRSEI DPELGFLADH SKAEIVDMLR KHTYDDELRQ GLRRGRGRAQ PTPAWARELL FEKAVTPSDV GKLNRLVVPK QHAEKHFPPT
201: TAAATGSNGK GVLLNFEDGE GKVWRFRYSY WNSSQSYVLT KGWSRFVKET GLRAGDTVAF YRSAYGNDTE DQLFIDYRKM NRDDEAADAA ISEENETGHV
301: AVKLFGVDIA GGGMAGSSGG

Best Arabidopsis Sequence Match ( AT1G13260.1 )
(BLAST)

001: MESSSVDEST TSTGSICETP AITPAKKSSV GNLYRMGSGS SVVLDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAVHRFRRRD AVTNFKDVKM DEDEVDFLNS HSKSEIVDML RKHTYNEELE QSKRRRNGNG NMTRTLLTSG LSNDGVSTTG FRSAEALFEK AVTPSDVGKL
201: NRLVIPKHHA EKHFPLPSSN VSVKGVLLNF EDVNGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVSFSRSNGQ DQQLYIGWKS RSGSDLDAGR
301: VLRLFGVNIS PESSRNDVVG NKRVNDTEML SLVCSKKQRI FHAS

Arabidopsis Description

RAV1AP2/ERF and B3 domain-containing transcription factor RAV1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.