Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G215000.1 | Wheat | nucleus | 90.44 | 96.36 |
| TraesCS1D01G203900.1 | Wheat | nucleus | 95.22 | 95.88 |
| TraesCS1A01G200500.1 | Wheat | nucleus | 90.44 | 95.32 |
| EER92015 | Sorghum | nucleus | 63.82 | 68.25 |
| Zm00001d029749_P001 | Maize | nucleus | 63.48 | 68.13 |
| Zm00001d047359_P001 | Maize | nucleus | 63.82 | 67.51 |
| Os10t0537100-00 | Rice | nucleus | 68.94 | 64.74 |
| HORVU4Hr1G074300.4 | Barley | nucleus | 25.6 | 50.0 |
| HORVU3Hr1G064590.1 | Barley | nucleus | 30.38 | 45.88 |
| CDY67348 | Canola | nucleus | 23.21 | 45.33 |
| HORVU0Hr1G022200.1 | Barley | nucleus | 30.38 | 44.5 |
| HORVU7Hr1G002230.1 | Barley | nucleus | 33.11 | 44.09 |
| GSMUA_Achr4P30170_001 | Banana | nucleus | 37.2 | 43.78 |
| HORVU4Hr1G084950.3 | Barley | nucleus | 50.85 | 43.7 |
| GSMUA_Achr4P26430_001 | Banana | nucleus | 36.52 | 42.8 |
| GSMUA_Achr5P12850_001 | Banana | nucleus | 30.72 | 42.65 |
| HORVU7Hr1G046950.1 | Barley | nucleus | 39.59 | 42.34 |
| CDY43060 | Canola | cytosol | 22.18 | 39.88 |
| GSMUA_Achr1P03600_001 | Banana | nucleus | 44.37 | 39.39 |
| Solyc08g013700.1.1 | Tomato | nucleus | 38.23 | 38.1 |
| Bra040478.1-P | Field mustard | nucleus | 37.54 | 37.54 |
| CDX80053 | Canola | nucleus | 37.88 | 37.37 |
| Bra004501.1-P | Field mustard | nucleus | 37.88 | 37.37 |
| CDY41564 | Canola | nucleus | 37.54 | 37.04 |
| PGSC0003DMT400015010 | Potato | nucleus | 37.54 | 36.67 |
| GSMUA_Achr4P24970_001 | Banana | nucleus | 29.35 | 36.6 |
| CDY27515 | Canola | nucleus | 37.54 | 36.18 |
| CDY48008 | Canola | nucleus | 37.54 | 36.18 |
| Bra003482.1-P | Field mustard | nucleus | 35.15 | 36.01 |
| CDY69432 | Canola | nucleus | 34.13 | 35.97 |
| AT2G46870.1 | Thale cress | nucleus | 37.88 | 35.81 |
| CDX67872 | Canola | nucleus | 34.81 | 35.79 |
| CDX83351 | Canola | nucleus | 37.2 | 35.39 |
| HORVU6Hr1G066190.2 | Barley | nucleus | 49.15 | 35.21 |
| Bra000434.1-P | Field mustard | nucleus | 37.2 | 35.16 |
| CDY50908 | Canola | nucleus | 37.54 | 34.92 |
| PGSC0003DMT400015011 | Potato | nucleus | 37.2 | 34.82 |
| AT3G61970.1 | Thale cress | nucleus | 35.49 | 34.78 |
| HORVU3Hr1G010200.1 | Barley | mitochondrion | 25.94 | 34.7 |
| CDY11388 | Canola | nucleus | 34.47 | 34.59 |
| Bra007646.1-P | Field mustard | nucleus | 34.47 | 34.59 |
| CDX76605 | Canola | nucleus | 34.47 | 34.59 |
| Solyc08g013690.1.1 | Tomato | nucleus | 37.54 | 33.95 |
| GSMUA_Achr2P10230_001 | Banana | nucleus | 35.15 | 33.88 |
| GSMUA_Achr5P10220_001 | Banana | nucleus | 31.4 | 33.82 |
| CDY15208 | Canola | nucleus | 36.86 | 33.54 |
| HORVU5Hr1G040620.4 | Barley | nucleus | 31.06 | 33.21 |
| CDY58763 | Canola | nucleus | 35.84 | 33.02 |
| GSMUA_Achr2P00400_001 | Banana | nucleus | 32.42 | 32.99 |
| GSMUA_Achr9P18780_001 | Banana | nucleus | 32.08 | 32.87 |
| CDX90001 | Canola | nucleus | 38.57 | 32.85 |
| CDY58764 | Canola | nucleus | 35.84 | 32.81 |
| Bra014415.1-P | Field mustard | nucleus | 35.84 | 32.81 |
| HORVU4Hr1G021650.22 | Barley | nucleus | 31.06 | 32.62 |
| Solyc08g083400.2.1 | Tomato | nucleus | 36.86 | 32.34 |
| Bra033294.1-P | Field mustard | nucleus | 37.88 | 32.27 |
| GSMUA_Achr5P20340_001 | Banana | nucleus | 36.52 | 31.75 |
| Bra030497.1-P | Field mustard | nucleus | 38.23 | 31.64 |
| AT1G01030.1 | Thale cress | nucleus | 38.23 | 31.28 |
| PGSC0003DMT400031863 | Potato | nucleus | 41.3 | 29.8 |
| AT4G01500.1 | Thale cress | nucleus | 33.45 | 29.43 |
| KRG97268 | Soybean | nucleus | 39.59 | 28.09 |
| KRH68988 | Soybean | nucleus | 39.93 | 27.86 |
| CDX97251 | Canola | nucleus | 31.74 | 27.43 |
| Bra008552.1-P | Field mustard | nucleus | 31.4 | 27.22 |
| CDY07140 | Canola | nucleus | 27.99 | 26.8 |
| VIT_02s0025g03000.t01 | Wine grape | nucleus | 41.3 | 26.54 |
| VIT_15s0048g02370.t01 | Wine grape | nucleus | 41.64 | 26.46 |
| Bra037417.1-P | Field mustard | nucleus | 27.99 | 26.45 |
| CDY49614 | Canola | nucleus | 27.99 | 26.45 |
| HORVU3Hr1G010100.2 | Barley | nucleus | 28.67 | 26.25 |
| HORVU3Hr1G064640.4 | Barley | nucleus | 31.74 | 24.47 |
| KRH47753 | Soybean | nucleus | 40.96 | 24.0 |
| HORVU3Hr1G010060.1 | Barley | nucleus | 28.67 | 23.86 |
| HORVU1Hr1G082670.6 | Barley | nucleus | 31.74 | 23.66 |
| HORVU3Hr1G010240.1 | Barley | nucleus | 27.99 | 23.56 |
| HORVU4Hr1G082090.2 | Barley | mitochondrion | 27.65 | 23.55 |
| HORVU3Hr1G010140.3 | Barley | nucleus | 27.3 | 20.62 |
| HORVU3Hr1G010190.5 | Barley | nucleus | 26.96 | 20.57 |
| KRH06334 | Soybean | nucleus | 40.27 | 20.27 |
| HORVU4Hr1G082030.2 | Barley | nucleus | 15.7 | 18.11 |
| HORVU3Hr1G010260.2 | Barley | mitochondrion | 11.26 | 16.67 |
Protein Annotations
| MapMan:15.5.5.3 | Gene3D:2.40.330.10 | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:HORVU1Hr1G051780 | EnsemblPlants:HORVU1Hr1G051780.2 | InterPro:IPR003340 | InterPro:IPR015300 | UniProt:M0YXE5 |
| PFAM:PF02362 | PFscan:PS50863 | PANTHER:PTHR31140 | PANTHER:PTHR31140:SF8 | SMART:SM01019 | SUPFAM:SSF101936 |
| UniParc:UPI000294E64E | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:-:384025012..384026557
Molecular Weight (calculated)
31555.7 Da
IEP (calculated)
10.341
GRAVY (calculated)
-0.227
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFSPTAPAG GEESQRVCAS SSVVEKEHMF EKVVTPSDVG KLNRLVIPKQ HAERYFPLDG AAAALAAEGS GGKGMVLSFE DRAGKAWRFR YSYWNSSQSY
101: VMTKGWSRFV KEKRLGAGDT VLFGRGVGDS AARGRLFIDF RRRRPAEAYS ATVAFPPPAT SSLSHRLPLL PSVPFCPWRR DFGFGSTYGV ASAASGSNRH
201: VLFLRQQVPA AVVLKSVPVR AAASVLEPPT RPMPKRVRLF GVNLDSPDTE DGGACGVTPM VTSTLLQQLL PSPSSSTSST AGKERQCSLD LGL
101: VMTKGWSRFV KEKRLGAGDT VLFGRGVGDS AARGRLFIDF RRRRPAEAYS ATVAFPPPAT SSLSHRLPLL PSVPFCPWRR DFGFGSTYGV ASAASGSNRH
201: VLFLRQQVPA AVVLKSVPVR AAASVLEPPT RPMPKRVRLF GVNLDSPDTE DGGACGVTPM VTSTLLQQLL PSPSSSTSST AGKERQCSLD LGL
001: MDLSLAPTTT TSSDQEQDRD QELTSNIGAS SSSGPSGNNN NLPMMMIPPP EKEHMFDKVV TPSDVGKLNR LVIPKQHAER YFPLDSSNNQ NGTLLNFQDR
101: NGKMWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDIVS FQRGIGDESE RSKLYIDWRH RPDMSLVQAH QFGNFGFNFN FPTTSQYSNR FHPLPEYNSV
201: PIHRGLNIGN HQRSYYNTQR QEFVGYGYGN LAGRCYYTGS PLDHRNIVGS EPLVIDSVPV VPGRLTPVML PPLPPPPSTA GKRLRLFGVN MECGNDYNQQ
301: EESWLVPRGE IGASSSSSSA LRLNLSTDHD DDNDDGDDGD DDQFAKKGKS SLSLNFNP
101: NGKMWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDIVS FQRGIGDESE RSKLYIDWRH RPDMSLVQAH QFGNFGFNFN FPTTSQYSNR FHPLPEYNSV
201: PIHRGLNIGN HQRSYYNTQR QEFVGYGYGN LAGRCYYTGS PLDHRNIVGS EPLVIDSVPV VPGRLTPVML PPLPPPPSTA GKRLRLFGVN MECGNDYNQQ
301: EESWLVPRGE IGASSSSSSA LRLNLSTDHD DDNDDGDDGD DDQFAKKGKS SLSLNFNP
Arabidopsis Description
NGA3NGA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3T3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.