Factsheet for Solyc08g013700.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015010	Potato	nucleus	89.8	88.0
Solyc08g013690.1.1	Tomato	nucleus	79.25	71.91
PGSC0003DMT400015011	Potato	nucleus	76.53	71.89
Zm00001d035982_P001	Maize	nucleus	18.71	62.5
Solyc08g083400.2.1	Tomato	nucleus	54.76	48.2
GSMUA_Achr4P26430_001	Banana	nucleus	37.41	44.0
Zm00001d048815_P001	Maize	nucleus	34.01	43.1
GSMUA_Achr4P30170_001	Banana	nucleus	36.05	42.57
TraesCS7A01G461000.1	Wheat	nucleus	27.55	41.54
TraesCS7A01G020800.1	Wheat	nucleus	27.89	41.41
Zm00001d029749_P001	Maize	nucleus	38.44	41.39
EER92015	Sorghum	nucleus	38.44	41.24
Zm00001d047359_P001	Maize	nucleus	38.78	41.16
Zm00001d010077_P001	Maize	nucleus	36.05	40.93
TraesCS7D01G448900.1	Wheat	nucleus	27.21	40.82
GSMUA_Achr5P12850_001	Banana	nucleus	29.25	40.76
HORVU0Hr1G022200.1	Barley	nucleus	27.55	40.5
TraesCS1B01G215000.1	Wheat	nucleus	37.76	40.36
TraesCS7B01G362500.1	Wheat	nucleus	26.87	40.31
Os06t0107800-02	Rice	nucleus	27.21	40.2
TraesCS1A01G200500.1	Wheat	nucleus	37.76	39.93
Os03t0120900-01	Rice	nucleus	42.18	39.87
GSMUA_Achr7P04630_001	Banana	nucleus	27.89	39.81
TraesCS4A01G472700.1	Wheat	nucleus	28.57	38.71
KXG19112	Sorghum	nucleus	26.87	38.54
TraesCS5A01G516600.1	Wheat	nucleus	41.5	38.49
TraesCS7D01G017000.1	Wheat	nucleus	28.23	38.25
TraesCS4B01G348500.1	Wheat	nucleus	41.5	38.24
HORVU1Hr1G051780.2	Barley	nucleus	38.1	38.23
TraesCS1D01G203900.1	Wheat	nucleus	37.76	38.14
TraesCS7A01G020700.1	Wheat	nucleus	27.89	38.14
HORVU7Hr1G002230.1	Barley	nucleus	27.89	37.27
Zm00001d035903_P001	Maize	nucleus	28.23	37.05
Zm00001d027409_P001	Maize	nucleus	41.16	37.0
HORVU7Hr1G046950.1	Barley	nucleus	34.35	36.86
GSMUA_Achr1P03600_001	Banana	nucleus	41.16	36.67
Os10t0537100-00	Rice	nucleus	38.78	36.54
OQU93364	Sorghum	nucleus	40.82	36.36
GSMUA_Achr4P24970_001	Banana	nucleus	28.91	36.17
Zm00001d024103_P001	Maize	nucleus	27.55	36.16
GSMUA_AchrUn_...	Banana	cytosol	29.59	36.1
Os04t0581400-01	Rice	nucleus	35.71	35.84
HORVU4Hr1G084950.3	Barley	nucleus	41.16	35.48
EES13386	Sorghum	nucleus	30.27	35.18
KXG19111	Sorghum	nucleus	28.23	34.87
Zm00001d024545_P001	Maize	nucleus	29.25	34.54
GSMUA_Achr5P10220_001	Banana	nucleus	31.29	33.82
VIT_02s0025g03000.t01	Wine grape	nucleus	51.36	33.11
HORVU6Hr1G066190.2	Barley	nucleus	45.58	32.76
TraesCS6D01G240600.1	Wheat	nucleus	45.92	32.61
GSMUA_Achr4P12210_001	Banana	nucleus	24.83	32.59
TraesCS6B01G286900.1	Wheat	nucleus	45.24	32.52
Os02t0683500-01	Rice	nucleus	45.24	32.28
TraesCS2B01G412700.1	Wheat	nucleus	44.9	32.27
TraesCS2A01G394700.1	Wheat	nucleus	44.22	32.18
TraesCS6A01G259600.1	Wheat	nucleus	45.24	32.13
TraesCS2D01G392400.1	Wheat	nucleus	44.56	32.03
GSMUA_Achr2P00400_001	Banana	nucleus	31.29	31.94
Zm00001d026005_P001	Maize	nucleus	43.54	31.68
GSMUA_Achr2P10230_001	Banana	nucleus	32.65	31.58
KRG97268	Soybean	nucleus	44.22	31.48
GSMUA_Achr9P18780_001	Banana	nucleus	30.61	31.47
KRH68988	Soybean	nucleus	44.9	31.43
EES12712	Sorghum	nucleus	44.56	31.19
Zm00001d002562_P001	Maize	nucleus	43.2	31.05
GSMUA_Achr5P20340_001	Banana	nucleus	35.37	30.86
Os08t0157700-00	Rice	nucleus	29.93	30.66
VIT_15s0048g02370.t01	Wine grape	nucleus	47.96	30.59
Zm00001d017618_P001	Maize	nucleus	43.54	30.33
Zm00001d051471_P001	Maize	nucleus	42.18	29.52
EES07445	Sorghum	nucleus	43.54	29.49
Solyc10g083210.1.1	Tomato	nucleus	30.27	28.9
KRH47753	Soybean	nucleus	46.6	27.4
Solyc09g010230.1.1	Tomato	nucleus	31.63	26.96
Solyc04g007000.1.1	Tomato	nucleus	30.95	24.46
KRH06334	Soybean	nucleus	47.28	23.88
Solyc05g009790.1.1	Tomato	nucleus	31.63	23.54
Solyc12g098460.1.1	Tomato	nucleus	15.99	22.49
Solyc03g083110.1.1	Tomato	nucleus	19.73	17.31

Protein Annotations

MapMan:15.5.5.3	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	UniProt:K4CJ05	PFAM:PF02362	PFscan:PS50863
PANTHER:PTHR31140	PANTHER:PTHR31140:SF38	SMART:SM01019	SUPFAM:SSF101936	EnsemblPlantsGene:Solyc08g013700.1	EnsemblPlants:Solyc08g013700.1.1
UniParc:UPI000276AE93	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:+:3168378..3169262

Molecular Weight (calculated)

33710.3 Da

IEP (calculated)

8.567

GRAVY (calculated)

-0.715

Length

294 amino acids

Sequence
(BLAST)

001: MNLFNSTMIH DEASDSASCY YSQQLKRPSS STTTELMLMD SSSTCDALVE REHMFDKVVT PSDVGKLNRL VIPKQHAEKY FPLDSSSNDK GGLLLNFEDS
101: NGKPWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDVVS FQRGAGELSK HRLFIDWRRR PHHENGNNQF MLPHQFSDGR IFPLQSYPTT FSRNYYNNPP
201: HSYYMYGIGN SSASTPYYSF NNNTSVMVNA SHFDHNLMKS TSVEEPRVFN SVPVVQGKVA AKRFRLFGVN MDYPTPSEES SEKGKSSMSF DLDI

Best Arabidopsis Sequence Match ( AT1G01030.2 )
(BLAST)

001: MDLSLAPTTT TSSDQEQDRD QELTSNIGAS SSSGPSGNNN NLPMMMIPPP EKEHMFDKVV TPSDVGKLNR LVIPKQHAER YFPLDSSNNQ NGTLLNFQDR
101: NGKMWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDIVS FQRGIGDESE RSKLYIDWRH RPDMSLVQAH QFEYNSVPIH RGLNIGNHQR SYYNTQRQEF
201: VGYGYGNLAG RCYYTGSPLD HRNIVGSEPL VIDSVPVVPG RLTPVMLPPL PPPPSTAGKR LRLFGVNMEC GNDYNQQEES WLVPRGEIGA SSSSSSALRL
301: NLSTDHDDDN DDGDDGDDDQ FAKKGKSSLS LNFNP

Arabidopsis Description

NGA3NGA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3T3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.